PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28313
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 609aa    MW: 66462.2 Da    PI: 6.3994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28313genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30259318159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ ed +++++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA28313 259 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCVEDMSILITTYEGTHNHN 318
                                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-31244320IPR003657WRKY domain
SuperFamilySSF1182904.05E-27252320IPR003657WRKY domain
PROSITE profilePS5081128.024254320IPR003657WRKY domain
SMARTSM007749.0E-36259319IPR003657WRKY domain
PfamPF031064.3E-26260317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MESSRSGDGD SGLKEDKRSE HSIGGDHESH HHDHKKETIV EEQPIANAEK SMVEAERIES  60
SAKNDKVVDD QLETTKVQMG EVREENQRLK MCLNKIMTEY RALEIQFQNM VKQETKKNNV  120
DTNDNNHDEI MAESDLVSLS LGRVPSNNVP KNEDKNNKVS KLTLNNEDGE FKEELALGLD  180
CKFETSKSSS TNEGLPNVPS PVNSSEVVPI KDDEVVETWP PSKVVNNKTT RDAEEEVAQQ  240
TPAKKARVCV RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC  300
VEDMSILITT YEGTHNHNLP LSATAMASTT SAAASMLLSG SSTSHSGSIP STQTNNNLHG  360
LNFYLPDGSK SNQLYLSNPA LSSQHSHPTI TLDLTSNPSN SSSTSPFVRF NNQLPRYPSS  420
TSLSFSSPES NPMHWNSFLS YATTQNQQPY NRNNNNLSTL NFGRQQNTME NIYQSYMQKN  480
NNSVLPDSTI SAATKAITAD PNFQSALAAA LSSLIGNNTN NNQGIQNNQS GGENLSQKMK  540
WAEMFPVSAS SLPSSSKVNG CASSFLNKKA PANAQTGSLM LLSPSLPFST TKSASTSPGG  600
GDNSDNTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21246320174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28313
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1227261e-116AC122726.22 Medicago truncatula chromosome 8 clone mth2-23o24, complete sequence.
GenBankAC1467761e-116AC146776.43 Medicago truncatula chromosome 8 clone mth2-125i24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609019.10.0probable WRKY transcription factor 72
SwissprotA0A3Q7GFB51e-126WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A2K3L3Z30.0A0A2K3L3Z3_TRIPR; WRKY transcription factor
STRINGAES912160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-69WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]