PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27130
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 906aa    MW: 100499 Da    PI: 6.539
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27130genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.6e-24127228199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +g
  Tp57577_TGAC_v2_mRNA27130 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAG 208
                                99*****************************8544444..48****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++ +l+++++r+
  Tp57577_TGAC_v2_mRNA27130 209 DSVLFI--WNDKNQLLLGIRRA 228
                                ******..7888889****997 PP
2Auxin_resp116.72e-38253336183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaa+t+s F+++YnPra++seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dld+ rWpnS+Wrs+k
  Tp57577_TGAC_v2_mRNA27130 253 AAHAAQTNSRFTIFYNPRACPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSARWPNSHWRSVK 336
                                79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.29E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-43120242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.43E-22126227No hitNo description
PfamPF023625.7E-23127228IPR003340B3 DNA binding domain
SMARTSM010192.3E-25127229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112127229IPR003340B3 DNA binding domain
PfamPF065071.3E-33253336IPR010525Auxin response factor
SuperFamilySSF542773.6E-6771847No hitNo description
PROSITE profilePS5174523.091772856IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MRLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE  60
VDGHIPNYPS LPPQLVCQLH NLTMHADVET DEVYAQMTLQ PLNAQEQKEA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRASR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAQTN SRFTIFYNPR ACPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIC DLDSARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFNGMKDD DFGMNSPLMW LRDTDRGLPS LNFQGIGLNP  420
WMQPRFDPSM LNMQTDMYQA VAAAALQDMR SVDPSKQHPG SLLQFQQPQN FPNRTAALMQ  480
AQMLQQSQSQ QAFQNNNPDN QNLSQSQLQN QSHSQQHLQH QHSFNNQLHN HNQQQQQTQQ  540
QVVDNQQNSG SVSTMSQFVS APQPQSPPPM QALSSLCHQQ SFSDSNVNSS TTIVSPLHSI  600
MGSFPQDETS HLMSLPRTSS WVPVQNSTGW PSKRVAVDPL LSSGTSQCIL PQVEQLGNPQ  660
NTVSQNAITL PPFPGRECTI DQEGSNDQQS NLLFGVNIDP TSLLMHNGMS NFKGIGGGNS  720
DSSTMPYHQS SNYMNTAGTD SSLNHGVAPS IGESGFLHTP ETGEQGNNPL NKTFVKVYKS  780
GSFGRSLDIT KFSSYNELRS ELARMFGLEG ELEDPVRSGW QLVFVDREND VLLLGDGPWP  840
EFVNSVWCIK ILSPEEVQQM GNTGLGLLNS VPIQRLSNSI CDDYVSRQDS RNLSSGITTV  900
GSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593869.10.0auxin response factor 6
RefseqXP_024632506.10.0auxin response factor 6
RefseqXP_024632507.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2K3PD910.0A0A2K3PD91_TRIPR; Auxin response factor
STRINGAES641200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]