PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2694
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 304aa    MW: 34777.1 Da    PI: 6.05
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2694genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.4e-092452792155
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                               + +yp++ee+ +L++++gL+ +q+ +WF N+R ++
  Tp57577_TGAC_v2_mRNA2694 245 RWPYPTEEEKLQLSENTGLDIKQINNWFINQRKRH 279
                               569*****************************885 PP
2ELK36.88.3e-13199220122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELK++LlrKY+gyL++L++EF+
  Tp57577_TGAC_v2_mRNA2694 199 ELKEMLLRKYGGYLSNLRKEFL 220
                               9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-175195IPR005540KNOX1
PfamPF037902.0E-185394IPR005540KNOX1
SMARTSM012561.0E-2398149IPR005541KNOX2
PfamPF037913.6E-23101148IPR005541KNOX2
PfamPF037895.3E-10199220IPR005539ELK domain
PROSITE profilePS5121311.313199219IPR005539ELK domain
SMARTSM011887.2E-7199220IPR005539ELK domain
PROSITE profilePS5007112.519219282IPR001356Homeobox domain
SuperFamilySSF466895.13E-19221291IPR009057Homeodomain-like
SMARTSM003892.1E-12221286IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-27224284IPR009057Homeodomain-like
CDDcd000861.94E-11231283No hitNo description
PfamPF059206.8E-17239278IPR008422Homeobox KN domain
PROSITE patternPS000270257280IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEDIYNSSGV INVNNISAAA QLQHHHHLGG GANNNNYLLQ MDLIGSDISD RILKNQIATH  60
PLYPNLLSAF IECQKVGVPS EVASLLEEIG RESHHNNALR QIGDDPDLDH FMESYCEILH  120
RYKEELSKPF NEATLFLCKI ESQLSQLCND TQQQGMSSDY NNRSDEAAGT SEDELSCERV  180
EAVEGHHEIC GTSCQGDKEL KEMLLRKYGG YLSNLRKEFL KKRKKGKLPK DARKTLMDWW  240
NVHYRWPYPT EEEKLQLSEN TGLDIKQINN WFINQRKRHW KPSEDMRFAI MEGVSSTGIT  300
RPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214223LRKEFLKKRK
2220224KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2694
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638687.11e-154homeobox protein knotted-1-like 10
SwissprotQ9FP291e-88KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0N9HLV31e-153A0A0N9HLV3_PEA; Class I knotted-1-like 8 homeobox transcription factor
STRINGAES614721e-154(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-75KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]