PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA26772 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 28445.4 Da PI: 9.1337 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++ ++ L H++ H Tp57577_TGAC_v2_mRNA26772 4 YKCKLCTRTLASSRALGGHMKAH 26 9*******************998 PP | |||||||
2 | zf-C2H2 | 15.3 | 5.5e-05 | 130 | 151 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +Cg F+++ L++H + + Tp57577_TGAC_v2_mRNA26772 130 KCDKCGNNFKSSRALESHRNIC 151 7*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.8E-5 | 3 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.65E-5 | 3 | 26 | No hit | No description |
SMART | SM00355 | 0.097 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.162 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.65E-5 | 124 | 148 | No hit | No description |
SMART | SM00355 | 90 | 129 | 149 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-9 | 165 | 188 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.61 | 166 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.746 | 166 | 188 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 168 | 188 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MERYKCKLCT RTLASSRALG GHMKAHFATL RLPPPPSEDE RSKRNPKLIF GQNSEQKKLK 60 QSFLDSHSPP TETEPEPEPE QVSSISDTSP EEEEVAITLM LLSRDKWNKN SEVERSMEEI 120 KHKKVSGKQK CDKCGNNFKS SRALESHRNI CLQNEANLVA TTSSVHKCMI CFKVFGSGQA 180 LGGHKRSHFY PPLKKKLSFF DLNLPPSPEE NDPSVLSDAP QLYNCWGLEI NKKKWGTCLY 240 MHVRSSRLAS Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA26772 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507870.1 | 2e-51 | zinc finger protein ZAT4 | ||||
Refseq | XP_017428081.1 | 2e-51 | PREDICTED: zinc finger protein ZAT4 | ||||
TrEMBL | A0A2K3MWT6 | 1e-156 | A0A2K3MWT6_TRIPR; Auxin-induced protein 5ng4-like | ||||
STRING | XP_007155662.1 | 1e-50 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 8e-30 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA26772 |