PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26601
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 355aa    MW: 41286.6 Da    PI: 5.3433
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26601genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.5e-35361262101
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k++++++d+++++++sws+ g+sfvv+d++ f++ +LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ 
  Tp57577_TGAC_v2_mRNA26601  36 FLTKTFDVVNDQSTNHIVSWSKGGTSFVVWDPHAFSNALLPKYFKHNNFSSFVRQLNTYGFRKIDPNR---------WEFANEG 110
                                9***************************************************************9998.........******* PP

                                XXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkk 101
                                F +g+++ l++i+rkk
  Tp57577_TGAC_v2_mRNA26601 111 FLRGQRHPLRNIRRKK 126
                                **************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-5532125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3333125IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-3733125IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-193659IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNYMYSVKEE YLEPLSSPFP PPQPIEGLHE IRPQPFLTKT FDVVNDQSTN HIVSWSKGGT  60
SFVVWDPHAF SNALLPKYFK HNNFSSFVRQ LNTYGFRKID PNRWEFANEG FLRGQRHPLR  120
NIRRKKGPSQ PIPNNNSQHG QGHCIDIEVG CFGLDAEIDR LRQEKHVLMM ELMSLRQKQY  180
NTTLYLLEME QRLQGIEINQ KQMTAFLARA IKNPVFIHQL LQQKVEKKEL EEAMNMTKKR  240
KLVEQGTRLG TGQSSSVKVE PLELGDCEFE GSELEMQVFE RGEMDKEEVD EALESQERIE  300
RLLGDEGFWE ELMFSLKFEG RFDIPTPEYN AENADDSSEP LNQEFRINSF HSVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-223612520120Heat shock factor protein 1
5hdg_A3e-223612510110Heat shock factor protein 1
5hdn_A3e-223612510110Heat shock factor protein 1
5hdn_B3e-223612510110Heat shock factor protein 1
5hdn_C3e-223612510110Heat shock factor protein 1
5hdn_D3e-223612510110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26601
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1560121e-169AC156012.22 Medicago truncatula clone mth2-168l11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468592.10.0heat stress transcription factor A-7a
RefseqXP_024635873.10.0heat stress transcription factor A-7a
SwissprotQ9LUH82e-92HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2K3LE600.0A0A2K3LE60_TRIPR; Heat stress transcription factor a-6b-like protein
STRINGAES608291e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-83heat shock transcription factor A6B