PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26234
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 205aa    MW: 22353.7 Da    PI: 4.4615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26234genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-182373155
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                               + y+GVr++  +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Tp57577_TGAC_v2_mRNA26234 23 PVYRGVRRRN-NGKWVSEIREPK----KpNRIWLGTFPTPEMAAIAYDVAALALKG 73
                               68*****887.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-112373IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-212482IPR016177DNA-binding domain
PROSITE profilePS5103223.092481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-302483IPR001471AP2/ERF domain
SMARTSM003803.9E-342487IPR001471AP2/ERF domain
PRINTSPR003673.8E-112536IPR001471AP2/ERF domain
CDDcd000184.08E-322583No hitNo description
PRINTSPR003673.8E-116383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSENTTTYAS SSSSGKVLSG RHPVYRGVRR RNNGKWVSEI REPKKPNRIW LGTFPTPEMA  60
AIAYDVAALA LKGKNAILNF PNSSSSLPVP ESSSARDIQT AAACAAAAIG AAEDALTSNI  120
NEGNNNHAAM EPQHEFFSSA NENNNVNHEF VDEDLIFDMP NVLVNMAEGM LLSPPRFDFA  180
SDEYDAQENN MCDDSNLWSY PYFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-171382373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26234
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494908.14e-83ethylene-responsive transcription factor ERF024
SwissprotQ9SJR08e-55ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A2K3N6H11e-129A0A2K3N6H1_TRIPR; Ethylene-responsive transcription factor erf024-like protein
STRINGXP_004494908.11e-82(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-38ERF family protein