PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 179aa MW: 19859.5 Da PI: 8.5671 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.8 | 3.1e-17 | 65 | 149 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +Y +YA+++GF ++k +sk+ ++g + t+ Cs+ gk ++ k+ ++++ t+t+Cka+l+ +dg+ +v+++ leH Tp57577_TGAC_v2_mRNA24487 65 YYMNYARHMGFGISKISSKNG-DDG-KKYFTLACSRAGKYVSNPKN---VLKPNPITKTQCKARLNACICSDGTVVVSSVILEH 143 8*************9998877.444.6889************9999...899******************************** PP FAR1 86 nHelap 91 nHel+p Tp57577_TGAC_v2_mRNA24487 144 NHELSP 149 ****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-14 | 65 | 149 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
LSPSIVASYS LLKLSVQEIS KSPSREGENK ESEIYDDKLD SNIVCEEEAP RTAMTFSSEE 60 EVTLYYMNYA RHMGFGISKI SSKNGDDGKK YFTLACSRAG KYVSNPKNVL KPNPITKTQC 120 KARLNACICS DGTVVVSSVI LEHNHELSPT KARYFRCNKN LGSHIKRRLE LNDQAGIN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24487 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT963108 | 2e-73 | CT963108.2 Medicago truncatula chromosome 5 clone mth4-37c5, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024642129.1 | 1e-68 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A2K3N9Z9 | 9e-82 | A0A2K3N9Z9_TRIPR; Protein FAR1-related sequence 6-like (Fragment) | ||||
STRING | XP_004496070.1 | 2e-57 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13793 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 7e-16 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24487 |