PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23074
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 148aa    MW: 16986.4 Da    PI: 7.6668
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23074genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.11.3e-0825654990
                       FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                               ++ + t+aetrt+C  ++ ++++ d+k++++++++ HnH l+
  Tp57577_TGAC_v2_mRNA23074 25 DTDKVTNAETRTDCPTRIALSRK-DEKFVIHEFVEAHNHLLQ 65
                               566889****************9.9**************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-62564IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
LKRNEGTLEF TCLHGLLEGL IDVHDTDKVT NAETRTDCPT RIALSRKDEK FVIHEFVEAH  60
NHLLQLPKTT HMLASHRKIS EVQAYEIEMA EDSGLMQKAS FQLMSAHVGG RDNLGYTRQY  120
AKNYLKERRK CRMLFGEVGS LMEYFQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23074
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362746.16e-49protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S2XKF49e-46A0A1S2XKF4_CICAR; protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7YFU82e-46A0A3Q7YFU8_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A3Q7YH295e-47A0A3Q7YH29_CICAR; LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5
STRINGXP_004490690.12e-46(Cicer arietinum)
STRINGXP_004506622.13e-47(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-11FAR1-related sequence 5