PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20970
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 576aa    MW: 64312.3 Da    PI: 5.8973
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20970genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.94.7e-871925742374
                       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                +e L+++A+++++++l+ aq +L+rl+++ +sp+g+p++R+a++f+ AL++ l++      ++ pp+ +s  + ++++  +k+f
  Tp57577_TGAC_v2_mRNA20970 192 IEELIRAADCFDNNNLQFAQVILERLNQRlRSPTGKPLHRAAFHFKDALQSLLSG----SNRTNPPRLSSMVEIVQTIRTFKAF 271
                                679*************************99************************9....55667888888888*********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLak 167
                                s +sPi+ fs +t+Nqa+lea++g+  +H++Df+i+ G+Q+++L++++a+++ +g+p lRiT+v+++e   + e + ++e+L++
  Tp57577_TGAC_v2_mRNA20970 272 SGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLGIQYASLMKEIAEKAvNGSPLLRITAVVPEE--YAVESRLIRENLNQ 353
                                ***************************************************99*************66..99999********* PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh. 248
                                fA+ lg++++ +++  +++e++++++ r+ +gE++a+ l  +++  l ++      + ++L+ v+++ P vvv+v+ e  ++  
  Tp57577_TGAC_v2_mRNA20970 354 FAHDLGIRVQVDFVPLRTFETVSFKAVRFVEGEKTAILLTPAIFCRLGSD-----GTAAFLSDVRRITPGVVVFVDGEgwTEAa 432
                                *************9999**************************9999332.....34789******************554445 PP

                       GRAS 249 nsesFlerflealeyysalfdsleak.......................lpreseerikvErellgreivnvvacegaerrerh 309
                                +++sF ++++++le+ys++++sl+a+                       ++   e+++ +E  ll+++i ++v ++g++     
  Tp57577_TGAC_v2_mRNA20970 433 SAASFRRGVVNSLEFYSMMLESLDASvaagxxxxxxxxxxxxxxxxxvaAGGGGEWARRIEMLLLRPKIISAVEAAGRR----- 511
                                778********************9999*******************96555556***********************98..... PP

                       GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     Wre++  aG++pv+ls++a  qa++ll+kv+ +g++v +++++lvl W++r++v++SaWr
  Tp57577_TGAC_v2_mRNA20970 512 --TTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWR 574
                                ..789***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.85165554IPR005202Transcription factor GRAS
PfamPF035141.6E-84192574IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MRVPPPAVSS SSSTSSSPQQ PKLTTQNILV PASNNPTTTT TTTTTATLCY EPRSVLELCR  60
SPSPEKKPTQ QEQHQHNNNN NEVEEEEDHA SLPNLDWWDS IMKDLGLQDD SSTPIIPLLK  120
NTNNTPEIYP NHSQDQFDQT QDFTSLSDIY SNNQNLAYNF PNTNINLDHL VHEFNHNNQP  180
NNNNNNSNWD FIEELIRAAD CFDNNNLQFA QVILERLNQR LRSPTGKPLH RAAFHFKDAL  240
QSLLSGSNRT NPPRLSSMVE IVQTIRTFKA FSGISPIPMF SIFTTNQALL EALHGSLFMH  300
VVDFEIGLGI QYASLMKEIA EKAVNGSPLL RITAVVPEEY AVESRLIREN LNQFAHDLGI  360
RVQVDFVPLR TFETVSFKAV RFVEGEKTAI LLTPAIFCRL GSDGTAAFLS DVRRITPGVV  420
VFVDGEGWTE AASAASFRRG VVNSLEFYSM MLESLDASVA AGXXXXXXXX XXXXXXXXXV  480
AAGGGGEWAR RIEMLLLRPK IISAVEAAGR RTTPWREAFY GAGMRPVQLS QFADFQAECL  540
LAKVQIRGFH VAKRQAELVL FWHERAMVAT SAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2219757325378Protein SCARECROW
5b3h_A3e-2219757324377Protein SCARECROW
5b3h_D3e-2219757324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484840.0AC148484.17 Medicago truncatula chromosome 8 clone mth2-46g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629479.10.0scarecrow-like protein 15
SwissprotO232101e-163SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2Z6N8480.0A0A2Z6N848_TRISU; Uncharacterized protein
STRINGAET039550.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-159GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]