PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20729
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 981aa    MW: 108245 Da    PI: 5.0222
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20729genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-173985148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g WT+eEde l  av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Tp57577_TGAC_v2_mRNA20729 39 KGQWTPEEDETLRLAVQRFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                               799****************************9.************986 PP
2Myb_DNA-binding60.14.7e-1991137148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g+W++eEd+  +++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA20729  91 KGPWSKEEDDVMIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137
                                79******************************.*************97 PP
3Myb_DNA-binding48.22.5e-15143185145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Tp57577_TGAC_v2_mRNA20729 143 KEAWTQEEELALIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 185
                                579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1253485IPR017930Myb domain
SuperFamilySSF466896.24E-183799IPR009057Homeodomain-like
SMARTSM007171.6E-143887IPR001005SANT/Myb domain
PfamPF002496.0E-153985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-214092IPR009057Homeodomain-like
CDDcd001672.64E-134285No hitNo description
PROSITE profilePS5129431.50786141IPR017930Myb domain
SuperFamilySSF466891.83E-3188184IPR009057Homeodomain-like
SMARTSM007173.7E-1790139IPR001005SANT/Myb domain
PfamPF002492.1E-1791137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2793140IPR009057Homeodomain-like
CDDcd001671.84E-1593137No hitNo description
Gene3DG3DSA:1.10.10.606.6E-21141192IPR009057Homeodomain-like
SMARTSM007171.2E-14142190IPR001005SANT/Myb domain
PROSITE profilePS5129419.577142192IPR017930Myb domain
PfamPF002492.4E-13143186IPR001005SANT/Myb domain
CDDcd001672.06E-11145185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MDGDQKMAVS QVDGHSDGVQ KIRAALHGRT TGPARRSTKG QWTPEEDETL RLAVQRFQGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDD VMIELVNKYG PKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPA INKEAWTQEE ELALIHAHQI YGNKWAELTK FLPGRTDNAI  180
KNHWNSSVKK KLDSYLASGL LTQFQSVPHV GNPSQPMVAT SSRLQCKEED NVLQGTEGDE  240
FLECSHESAN ALQFPSTREM TSVDSQTVGG YRPNEECSLA TDHSPSQASC SEPCYLAIDA  300
VTLCISEIAH HDACSSEFSE RMHEPNSTNE DDQFNLHSLP NISSMELGED SSQLQRDCTE  360
PSGICDLVNV PYQTSVDLAV STPMETASMD SAKPDHMLIT DDECCRVLFS EAKNDRCFIP  420
GDYNKGVDAV EFSGHPAVCQ SCHIQISETG GTSTQPISCP QCSNNFKGML SSQSTRPVHS  480
AEHEDRQFVS RSHDDFTYAN DTSSSRCIDA IDSTVMQDVK QTCYPTDEKP NKNTKKEDNG  540
ALCYEPPRFP SLDIPFLSCD LVQSGGDMQQ EFSPLGIRQL MMSSMNCLTP SRLWDSPSRD  600
DSPEALLKSA AKTFTGTPSI LKKRCRDLLS PLSNKRIGKK LETDMTSSLA EAFSSLEADI  660
LSPSSLQKQN SVASGFDDDK ENCGEADKGK QVEETIKSVI LEENKSQREA LDSNSPGKVK  720
KQPFAVDSKM KIDAAAENAH QSSGVLSEHD RNDLSLYSSD QVGFRDRVPR NSNNRSSEIA  780
PNQSIPSKLS SEKQCSRFSS PCVRAKEHEN LTVSVTRVKA PGANLSDQSK NDGGFETCSI  840
FGGTPFGKGF ESPSPWKSPW LRNTFLCSPN PELTIEDFGF FKSPGGDKSY DAIGLLQQVG  900
EQTAATYENA QEILKNDTPK ALPKDASGND KNSDEENNNP SKANSSKYTS NDLVECRMLD  960
FSECGTPEKG DSSKSSASEQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20729
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498481.10.0transcription factor MYB3R-1-like isoform X2
SwissprotQ9S7G71e-176MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A2K3P3Q50.0A0A2K3P3Q5_TRIPR; MYB-related protein 3r-1-like
STRINGXP_004498480.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]