PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2023
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 570aa    MW: 62899.7 Da    PI: 7.7124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2023genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.81.7e-17268317255
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Tp57577_TGAC_v2_mRNA2023 268 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 317
                               889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-24263339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-19264338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.653266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-15268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-15268321No hitNo description
SMARTSM003531.5E-13272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MELPQSRPCG AEGRKSTHDF LSLYSNQTAE QDPRPSAQAS YLKTHDFLRP LEQVETKSDT  60
KEEATDEISS VVQKQPPLAT PASVEHILPG GIGTYSISHI NSYVNNNQRI PKPEASLFTV  120
HQATSADRND DNSNCSSHTS SGFTLWEESD IKKGKTGKEN NVGEKPIIGV ADSAAKLGQW  180
TLTERTSQSF SNNLHGSFNS RSSSQTTGQK NQSFMEMMKS AQDCAQDEVL ENEGTFFLKR  240
ESSNNTQRGE LRVRVDGKST DQKPNTPRSK HSATEQRRRS KINDRFQMLR ELIPHSDQKR  300
DKASFLLEVI EYIHFLQEKV HKYEGSFQSW NNEPEKLMPW RNNDRPAESF QPRGTNSGPN  360
PSPTLLFASK IDEKNTTISP TIHGGPHNLE SGLSTPPTAF KTMDHQSGIM NKALPIPISS  420
QPNFFASSQI GGSGGAVSQL RHRLASDAEN TIYQPSVETQ AMTSTSEKLK EKELTIEGGA  480
ISISSVYSNG LLDTLTQALQ SSGVDLSQAN ISVQIELGKQ ASIRPNVPMS MCVTKDDEDP  540
SKNQRKIRSR VSGSEKSDQA LKKLKTCRS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458032.10.0transcription factor BIM1 isoform X2
TrEMBLA0A2Z6MTN70.0A0A2Z6MTN7_TRISU; Uncharacterized protein
STRINGXP_004508645.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-128bHLH family protein