PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA2023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 570aa MW: 62899.7 Da PI: 7.7124 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.8 | 1.7e-17 | 268 | 317 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Tp57577_TGAC_v2_mRNA2023 268 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 317 889*************************9....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-24 | 263 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-19 | 264 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.653 | 266 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-15 | 268 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.76E-15 | 268 | 321 | No hit | No description |
SMART | SM00353 | 1.5E-13 | 272 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MELPQSRPCG AEGRKSTHDF LSLYSNQTAE QDPRPSAQAS YLKTHDFLRP LEQVETKSDT 60 KEEATDEISS VVQKQPPLAT PASVEHILPG GIGTYSISHI NSYVNNNQRI PKPEASLFTV 120 HQATSADRND DNSNCSSHTS SGFTLWEESD IKKGKTGKEN NVGEKPIIGV ADSAAKLGQW 180 TLTERTSQSF SNNLHGSFNS RSSSQTTGQK NQSFMEMMKS AQDCAQDEVL ENEGTFFLKR 240 ESSNNTQRGE LRVRVDGKST DQKPNTPRSK HSATEQRRRS KINDRFQMLR ELIPHSDQKR 300 DKASFLLEVI EYIHFLQEKV HKYEGSFQSW NNEPEKLMPW RNNDRPAESF QPRGTNSGPN 360 PSPTLLFASK IDEKNTTISP TIHGGPHNLE SGLSTPPTAF KTMDHQSGIM NKALPIPISS 420 QPNFFASSQI GGSGGAVSQL RHRLASDAEN TIYQPSVETQ AMTSTSEKLK EKELTIEGGA 480 ISISSVYSNG LLDTLTQALQ SSGVDLSQAN ISVQIELGKQ ASIRPNVPMS MCVTKDDEDP 540 SKNQRKIRSR VSGSEKSDQA LKKLKTCRS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA2023 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458032.1 | 0.0 | transcription factor BIM1 isoform X2 | ||||
TrEMBL | A0A2Z6MTN7 | 0.0 | A0A2Z6MTN7_TRISU; Uncharacterized protein | ||||
STRING | XP_004508645.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7252 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-128 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA2023 |