PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA19806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 27736 Da PI: 8.3706 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00019 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Tp57577_TGAC_v2_mRNA19806 80 FSCNYCQRKFYSSQALGGHQNAH 102 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.35E-6 | 77 | 108 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDLLRSEPCS SHNLNILFSE KKQTENEEKK HLLDLSLPSN YPCDDESKQE LNLINCFDTE 60 TSMNSSSESN HGNELEPRIF SCNYCQRKFY SSQALGGHQN AHKRERTMAK RGHKAAVSLD 120 FEHRYSSLAS LPLHGSYNRS SSLGIQVHSS MVHKPSYQTP FFGLSRSRAQ NQWQKLPMYS 180 QQAIGNLASE TDGSSLASVI PTRSGRFSPT KVQDGLIGGY WLGNSATTTC LKTKQEELQK 240 LDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA19806 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465589.1 | 1e-126 | zinc finger protein 1 | ||||
TrEMBL | A0A2K3NC28 | 0.0 | A0A2K3NC28_TRIPR; Zinc finger protein 3-like | ||||
STRING | XP_004486622.1 | 4e-94 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 3e-38 | zinc finger protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA19806 |