PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19776
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 288aa    MW: 33945 Da    PI: 5.0143
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19776genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.14.1e-2647127103
                                EEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  27 sfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                                 fvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g k+ll++ikr++++
  Tp57577_TGAC_v2_mRNA19776   4 IFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFLRGYKHLLSNIKRRRQT 71 
                                59**************************************999.........**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-29268IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-22468IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-23568IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.4E-26568IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-101729IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401842IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-103042IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDVIFVVWDP NAFSRDLLPR YFKHNNFSSF VRQLNTYGFR KIDPDKWEFA NEGFLRGYKH  60
LLSNIKRRRQ TSSQPSTSQT HSQGHCVDVG RFGLDEEIDH LRRDKQVLMM ELVKLRQQQQ  120
NTRSLLQAME ERLRGTEIKQ QQMMAFLARA MKNPAFIQQL LQHKEKRKEI EEAITKKRRR  180
PIEYGESSND VKYGFEVSEL EVLAMEMQGL GRGKREYEEE IDVFETNEKL NKELDEEFWE  240
ELFSEKFENE LDILTSQGDD DDDDDVDGED RVNVLANRFG YLGSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-1557346125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165179KRKEIEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19776
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496397.11e-148heat stress transcription factor A-7a
SwissprotQ9LUH86e-95HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2Z6PHJ61e-179A0A2Z6PHJ6_TRISU; Uncharacterized protein (Fragment)
STRINGGLYMA03G31381.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.16e-93heat shock transcription factor A6B