PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19353
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 589aa    MW: 66826 Da    PI: 4.9951
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19353genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM912.1e-281442831128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                                lp+G++F+P+d++++++ L+k  +g++     ++++ + i+e  +i++++P++Lp  ++++ +  +fF+k+ k+y++g rk+r 
  Tp57577_TGAC_v2_mRNA19353 144 LPKGVKFDPSDQDIMSHLLAKVGAGDSephpfIDEFITtIEEEgGICYTHPQHLP-GISQDGSAAHFFHKAVKAYNSGGRKRRR 226
                                799************777766666665787774444444888878**********.677788999**************99995 PP

                        NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                       + +W++tgk+++++  +g + g kk++v+y    +  k+ekt+W++h+y++
  Tp57577_TGAC_v2_mRNA19353 227 ifdqdLGELRWHKTGKTRPIFL-NGIQRGSKKIMVLYtiPSNGGKAEKTNWIVHQYHI 283
                                4554434678************.99************5435667778*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-32129302IPR003441NAC domain
PROSITE profilePS5100530.111144302IPR003441NAC domain
PfamPF023652.1E-10145283IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAGYGCWTML IKVLNGARVM IALQSLILNK LQSIRYDVAA IVFDRNVNME IKVSCCNCDR  60
DAVIETKVLN CVKILHFVGV WGRIKHVWPQ ISSWLVDKKT IATRIKYAST ATAEVHFESN  120
PCISCPNCQH VIDNNNLKQQ LPGLPKGVKF DPSDQDIMSH LLAKVGAGDS EPHPFIDEFI  180
TTIEEEGGIC YTHPQHLPGI SQDGSAAHFF HKAVKAYNSG GRKRRRIFDQ DLGELRWHKT  240
GKTRPIFLNG IQRGSKKIMV LYTIPSNGGK AEKTNWIVHQ YHIGREEDEK DGEYVVSKIF  300
YQQQQPNGEY VVSKIFYQQQ QPVKLGKKDG QDVPETSGEA RVVDPVTPNF VTPELPCNKK  360
QCSDMNQQQE SQQEPQHISQ ILPNIHQWLL DSQNDREECS DMNQEQESHH MNQEQEPHQF  420
SQILPNIPQW LLDSPDDYGD LPNIDLSMVE SQNIEGIDDI DLSLNLFPSQ QFAEESPFMF  480
DFIQNHPSPK RNVEDREQME QLSISGFAHL GAEQSKKDTD EQIQKDTEVC QNPDLNTNNI  540
GECQNLDLDI GNVELDPQPS DFHLSQLDFS SQDSYIAWGG SINKTLFK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221225RKRRR
2222226KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19353
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591828.20.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A2K3NY190.0A0A2K3NY19_TRIPR; NAC domain-containing protein
STRINGAES620790.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56623354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.17e-99NAC family protein