PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA19264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 424aa MW: 48139.4 Da PI: 9.162 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54 | 3.1e-17 | 11 | 96 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + + +l+s++l++p +f+++hg++ s t++ ++g +W++ l +k ++r++l++GW+eFv+ + g f+vF+++g+s+f Tp57577_TGAC_v2_mRNA19264 11 IL-PTTLQSRQLRIPDNFLKKHGSQ--LSSYATVTVPDGAVWRIGL--KKVDNRIWLSDGWQEFVQRYSIGIGYFLVFMYEGNSTF 91 43.45566778***********988..77789999***********..**********************************9999 PP ..EEEEE CS B3 91 elvvkvf 97 v++f Tp57577_TGAC_v2_mRNA19264 92 --IVHMF 96 ..88877 PP | |||||||
2 | B3 | 58.1 | 1.6e-18 | 292 | 382 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 vl ps+ + ++++lp fae++ +g++ ++l++++ r+W v++ yr+++ l++GW eF +n+L egD++vF+l + Tp57577_TGAC_v2_mRNA19264 292 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQTTDARQWPVRCLYRGGR--AKLSQGWYEFTVENNLGEGDVCVFELLR 370 78899******************877743...5***************665555..66************************99 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++ l v++fr Tp57577_TGAC_v2_mRNA19264 371 TRDVVLQVTLFR 382 999989999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.5E-23 | 2 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-23 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.54E-18 | 5 | 97 | No hit | No description |
PROSITE profile | PS50863 | 13.169 | 6 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-17 | 7 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-15 | 13 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-23 | 281 | 382 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.68E-24 | 282 | 383 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.45E-21 | 287 | 382 | No hit | No description |
SMART | SM01019 | 5.7E-20 | 289 | 384 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.789 | 289 | 384 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-16 | 292 | 382 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MSTRPSFHKI ILPTTLQSRQ LRIPDNFLKK HGSQLSSYAT VTVPDGAVWR IGLKKVDNRI 60 WLSDGWQEFV QRYSIGIGYF LVFMYEGNST FIVHMFNMST AELNYQSTMR SHNEGYSNYL 120 PIFGEMEDID SFEFLDSSPS NLTPGAMDQL TPGKNHTPSL QNLFNGGSKL NRVNWGDIGG 180 TLSSKVAIQS TKDVGVQFNA NEFKKSTEEV KLRYTNEDGL NNSDTKKTPR RKRKLDPSAQ 240 EAAAENDEDG DIRYRFYESA SARKRIVTAE ERERAINEAK TFEPTNPFCR VVLRPSYLYR 300 GCIMYLPSCF AEKNLNGVSG FIKLQTTDAR QWPVRCLYRG GRAKLSQGWY EFTVENNLGE 360 GDVCVFELLR TRDVVLQVTL FRVKEDESGL FNPSMQPIQN VSHAKLLNPH LQHRVSSTKS 420 AKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-74 | 255 | 385 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-74 | 255 | 385 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 234 | PRRKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA19264 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013466718.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 1e-128 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2K3MX92 | 0.0 | A0A2K3MX92_TRIPR; B3 domain-containing transcription factor vrn1-like protein | ||||
STRING | XP_004498177.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-130 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA19264 |
Publications ? help Back to Top | |||
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