PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18747 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23634.3 Da PI: 4.8067 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa a++ a+++++g Tp57577_TGAC_v2_mRNA18747 54 LYRGVRMRH-WGKWVSEIREPKK---KSRIWLGSFPTPEMAAIAHDVAAQAIKG 103 69****999.**********854...6**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-11 | 53 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.62E-32 | 53 | 113 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-30 | 54 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 54 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-37 | 54 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.746 | 54 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
LSISNIYSLV FSPKNMEQVS VSMDNEIELT TSISSSIENN KTKPKSDNNG KHPLYRGVRM 60 RHWGKWVSEI REPKKKSRIW LGSFPTPEMA AIAHDVAAQA IKGSSAYLNF PELAEHLPRP 120 ATNSPKDIQA AAKAASMDFR HEAQAQAHDL QESSNSSLTD EDDMFYDLPD LLLDTNNNST 180 TELYYSSMPW LAAGAEYSNS GFGLDEPLPW EP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 50 | 111 | 3 | 63 | ATERF1 |
3gcc_A | 1e-16 | 50 | 111 | 3 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18747 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611338.1 | 7e-87 | ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 1e-50 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2K3LVL2 | 1e-144 | A0A2K3LVL2_TRIPR; Ethylene-responsive transcription factor erf034-like protein | ||||
STRING | AES94296 | 3e-86 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18747 |
Publications ? help Back to Top | |||
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