PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18659
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 776aa    MW: 87229.6 Da    PI: 6.2745
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18659genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.66.6e-37119195177
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                +Cqv+gCe+d+se+k yhrrh+vC  +++a +v+v+g+ +r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k 
  Tp57577_TGAC_v2_mRNA18659 119 RCQVPGCEVDISELKGYHRRHRVCLRCANAVTVVVDGEAKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNNRRRRKP 195
                                6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-28115181IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.829117194IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-34118198IPR004333Transcription factor, SBP-box
PfamPF031101.8E-27120194IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MDSQSQSQSQ SIPLPMEPPE DLSSVWDLSD LLDFNLDDEI PQLPLLPNPN PNPNPNDINT  60
TNNNDNNDKI RKRDPRLTCS NFLAGYVPCA CPELDALLED KGLPGKKRAR TVRASTSARC  120
QVPGCEVDIS ELKGYHRRHR VCLRCANAVT VVVDGEAKRY CQQCGKFHVL PDFDEGKRSC  180
RRKLERHNNR RRRKPADSVA GVDNELQTVT QNDDSNCDGE AGIDYSNLSS ENIEKRVLLD  240
HEEEPVVTGS STPETQNING DGVVSFAASA EEQVNIGKDV SNLSKSPSFC DNKSDYSSMC  300
QTGRVSFKLY DWNPAEFPRR LRLQIFQWLA SMPVELEGYI RPGCTILTIF IAMPSVMWIN  360
LLKDPMYYVR ELVAPRNMLS GRGTALIHLN DMIFRVMKDG SSVMKVEVNE QAPKLHYIHP  420
TCFEAGKPME FFACGSNLLQ PKFRLLVSFY GKYLKYEYCV PSPHNLAEDN TSCAFDNQLY  480
KICVPHIEEN LLGPAFIEVD NESGLSNFIP VLIADKEVCT EMKILQQKLD ASLRSKQFRS  540
ASGGSVCSSC EAFVHTHTSS SDLLVDIAWL LKDPASENFD RMISASQIQR YCHLLDFLIS  600
NDSTIILGKI LPNLIILTES MKSNINDVDM FQLLKCMQNA KDVICQKGGG LVLHSKMDDF  660
KPGQYCSQDD KLSVVEVNSQ GIQFRVDAEL GVPRSLPSDE KSQKIPLLKR DIIMNMEEFP  720
RRCDRRNLTR GFLSSRPTIF VLVSVVVCLM VCVSIFHHGR VNELAVSIRR CLFNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-42115198184squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180192RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18659
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462681.20.0LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 7
TrEMBLA0A2Z6M5830.0A0A2Z6M583_TRISU; Uncharacterized protein
STRINGAES642860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7