PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18397
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 437aa    MW: 48378.5 Da    PI: 8.5497
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18397genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.82.3e-41165240277
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                CqvegC  dls+akeyhr+h+vCe h+k+p+v+v+gle rfCqqCsrfh++sefD++krsCrrrL++hn+rrrk+ 
  Tp57577_TGAC_v2_mRNA18397 165 CQVEGCGLDLSSAKEYHRKHRVCESHAKSPMVVVAGLELRFCQQCSRFHSVSEFDDKKRSCRRRLSDHNARRRKPP 240
                                **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33162226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.129162239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-39163244IPR004333Transcription factor, SBP-box
PfamPF031101.5E-32165238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEWNAKSPGQ WDWENLFLLN SKATENHRLQ STDWSAETDR EINVGVLFPS GDNGYSMSKL  60
AHGSSSRSSK SPSNNSSSNG ESKTSMLTQE GSQDNSTGKK ELSKGDPFET SPAAEPLLTL  120
KLGKRFYFED VCPETHSKKA SSSAVPLSCK KKGKSKSPDL LQPSCQVEGC GLDLSSAKEY  180
HRKHRVCESH AKSPMVVVAG LELRFCQQCS RFHSVSEFDD KKRSCRRRLS DHNARRRKPP  240
PEAVQLNPSA LHSSPYDRRQ IMGSFDFSRT ATNLPWQGIL SSKLPQTKDF MLKPPKATFN  300
KIVTMLSDDS NGHLASKGTG SKSTFPEDQA TLSDPNATQD VNRALSLLST NSWGAYDTKS  360
LSLDHSNRTT GTTQSITHTI SQRSPFPSSE YWHTDQQHTN SSTCISFSGY DNSSRFQDFQ  420
LFNAPFESSF PCSQLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-271652381184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220237KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18397
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601767.20.0squamosa promoter-binding-like protein 12
RefseqXP_024634073.10.0squamosa promoter-binding-like protein 12
RefseqXP_024634074.10.0squamosa promoter-binding-like protein 12
TrEMBLA0A2K3PNR20.0A0A2K3PNR2_TRIPR; Squamosa promoter-binding-like protein 12-like
STRINGXP_004502286.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-50squamosa promoter binding protein-like 2