PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17687
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 419aa    MW: 46676.9 Da    PI: 6.8865
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17687genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.15.9e-39156231176
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                                +CqvegC  dls+ak+yhr h +Ce+hsk+ +v+v+gle+rfCqqCsrfh+l efDeekrsCrrrLa+hn+rrrk+
  Tp57577_TGAC_v2_mRNA17687 156 RCQVEGCGLDLSSAKKYHRSHNICEIHSKSRMVVVAGLERRFCQQCSRFHDLFEFDEEKRSCRRRLAHHNARRRKH 231
                                6*************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-31149218IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.282154231IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-36155232IPR004333Transcription factor, SBP-box
PfamPF031103.1E-29157230IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010358Biological Processleaf shaping
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDWNAKSPSS GWGLDHLSFF NAKATESPKF QPPNWLIELD RENNVGLFDT PGGSGCSGSE  60
LILGSTSRSS KSASIGSSLN RDSETKEYPM ESSHAPELSS VSGEPLLTLR LGKRMYSEDV  120
CPESDAEYLS FSRDLMSSLS VGKKLKSNGQ NLKTPRCQVE GCGLDLSSAK KYHRSHNICE  180
IHSKSRMVVV AGLERRFCQQ CSRFHDLFEF DEEKRSCRRR LAHHNARRRK HGPLDAVQSS  240
RSASRRAGKQ QMNPLAHSKT DRNLALQDIP NSKLPQTKDF LLKPSKYNND IPSSLAMLSA  300
DSDVHFTCKA LETKSTSPDI DDFLDFSDTN ATQDFTCALS LLSTISLEHS NHTTINPEAV  360
THAMNLRMPL VSSESWCGDD DQHVNSSMWS SNCEDGSHFQ EFKLFRGPYE SGFHHQMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271572301184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504410.21e-163squamosa promoter-binding-like protein 2
TrEMBLA0A2K3PB060.0A0A2K3PB06_TRIPR; Squamosa promoter-binding-like protein 12-like
STRINGXP_004504410.11e-169(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-38squamosa promoter binding protein-like 2