PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA16782

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

DBB

Protein Properties

Length: 272aa MW: 30653.6 Da PI: 7.0321

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA16782	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.8e-06	19	59	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++lfC ++ lC+ C + H+ H+ Tp57577_TGAC_v2_mRNA16782 19 IQCDACQKQEASLFCPADEAALCNHCDHTVHHAnklsakHK 59 57****************************64447777776 PP
2	zf-B_box	30.8	5.9e-10	72	111	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e ++ lfC++++ lC++C +H++ H Tp57577_TGAC_v2_mRNA16782 72 PLCDICKERRAYLFCKEDRAILCRECDIPIHRDteltkkH 111 78*****************************776666556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	3.0E-8	16	63	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	11.462	16	63	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.3E-5	19	60	IPR000315	B-box-type zinc finger
CDD	cd00021	6.21E-5	19	63	No hit	No description
SMART	SM00336	3.1E-11	69	116	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.466	69	116	IPR000315	B-box-type zinc finger
CDD	cd00021	2.27E-9	72	116	No hit	No description
Pfam	PF00643	5.0E-8	72	112	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0080167	Biological Process	response to karrikin
GO:1900458	Biological Process	negative regulation of brassinosteroid mediated signaling pathway
GO:2000306	Biological Process	positive regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
LSSNQNLIFK ILKHKEMKIQ CDACQKQEAS LFCPADEAAL CNHCDHTVHH ANKLSAKHKR 60 FSLHHPTSKD IPLCDICKER RAYLFCKEDR AILCRECDIP IHRDTELTKK HNRFLLTGVK 120 IGAAASSSDP TTSNGSEVRT SLSRESRPSS FSSENNRCSR TFKDNMACDT VSTSRISEYL 180 IESIPGYCME DLFDASFAPS VYCKDYQQNQ DHQVISMCDS VPQYEVRSPQ LSLSANSNVP 240 QIDSLDGVME MPITKAVEGY SSWRYNVLLD R*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA16782

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003607012.1	1e-116	B-box zinc finger protein 20
Swissprot	Q0IGM7	4e-56	BBX20_ARATH; B-box zinc finger protein 20
TrEMBL	A0A2K3NLW5	0.0	A0A2K3NLW5_TRIPR; Putative salt tolerance-like protein
STRING	AES89209	1e-115	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	3e-55	DBB family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA16782

Publications ? help Back to Top
Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514]