PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1391
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 914aa    MW: 102156 Da    PI: 4.8967
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1391genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.6e-183379148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g WT+eEde l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Tp57577_TGAC_v2_mRNA1391 33 KGQWTAEEDEVLRKAVEHFQGKNWKKIAESFP-DRTDVQCLHRWQKVL 79
                              799*****************************.************986 PP
2Myb_DNA-binding65.78.8e-2185131148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W++eEde ++d+v+++G++ W+tIa++++ gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA1391  85 KGPWSKEEDEAIIDLVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 131
                               79******************************.*************97 PP
3Myb_DNA-binding51.13.1e-16137179145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               + +WT+eE++ l++a++ +G++ W+  ++ ++ gRt++ +k++w+
  Tp57577_TGAC_v2_mRNA1391 137 KEAWTQEEELALIHAHNIYGNR-WAELSKFLP-GRTDNAIKNHWN 179
                               579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6192879IPR017930Myb domain
SMARTSM007171.9E-153281IPR001005SANT/Myb domain
PfamPF002492.2E-153379IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-163489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-223591IPR009057Homeodomain-like
CDDcd001674.15E-143679No hitNo description
PROSITE profilePS5129432.98580135IPR017930Myb domain
SuperFamilySSF466893.11E-3282178IPR009057Homeodomain-like
SMARTSM007179.7E-2084133IPR001005SANT/Myb domain
PfamPF002497.4E-1985131IPR001005SANT/Myb domain
CDDcd001673.08E-1787131No hitNo description
Gene3DG3DSA:1.10.10.609.7E-2892138IPR009057Homeodomain-like
SMARTSM007172.0E-16136184IPR001005SANT/Myb domain
PROSITE profilePS5129420.398136186IPR017930Myb domain
PfamPF002492.2E-14137180IPR001005SANT/Myb domain
CDDcd001678.27E-13139179No hitNo description
Gene3DG3DSA:1.10.10.601.0E-21139186IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MGSERKLPAS SDTVHKIRPL HGRTTGPTRR STKGQWTAEE DEVLRKAVEH FQGKNWKKIA  60
ESFPDRTDVQ CLHRWQKVLN PELIKGPWSK EEDEAIIDLV NKYGPKKWST IAQHLPGRIG  120
KQCRERWHNH LNPSINKEAW TQEEELALIH AHNIYGNRWA ELSKFLPGRT DNAIKNHWNS  180
SVKKKLDSYL ASGLLAQFQN VPLVGNLHQP IASSSARLQY SVDDNGPAMT EGEEVSQCSQ  240
ESANAGHFPS GSELSIVVIQ NREEYRSNEE SNQASCSEIY YMSLDDITRQ ESFEQKYSNE  300
PGSSSANVDC QFNLHALPNI SSHDIGQEPS QFQNDTLARS ESHNMIIVPY EYQSSSMDND  360
AKGEQNMSIT DDDCCRFLFS EAMSDECFSS GGVNNVDLSG RTSSLCQSSL PSGDRMMYTA  420
EANQLVGSED QKYVSREHDG LVYANDNNRI EDVVKDDNLK LVPGNSSGCG SDTMQTCYPT  480
DEKPNVHLQQ EETGGTLCYE PPRFPSLDIP FLSCDLVQSG DMQQEFSPLG IRQFMMSSMN  540
CLTPLRLWDS PSRIDSPNAL LSSAAKTFTS TPSIMKKKKR NRDLLTPLSD RRMEKKHEID  600
MTSTLITNFS RLDVMFDDSE TQGIEDDKEN CGPAFKVGEK RNSQEKIEQP SLDADSKMKN  660
DIDTAAEIVQ QPSRVLVERD MNDPSLYSPN QIGLKSDIVL SLSARSHKKP VSRLNSPCVR  720
LKEHERLSVS VTCVQSICSS SGPGENMDDQ TGNDDSFETN CIFGGTPFRK SFESPSAWKS  780
PLFISTFMSS PRIDTEITIE DYGCFFSPGD KSYDALGWLK QIEEHTAAQY ANALEVLENE  840
PPMALTKDPS GSDQGNNDPH NQHANHYPST SNVLVERRML DFSECETSDK DDKGKSSAIS  900
ISSPSSYLLK GCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-71331866159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-71331866159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1391
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190416.10.0transcription factor MYB3R-1 isoform X2
SwissprotQ9S7G71e-179MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A2K3NM700.0A0A2K3NM70_TRIPR; MYB-related protein 3r-1-like
STRINGXP_004501185.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]