PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11023
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 335aa    MW: 37730.3 Da    PI: 8.8415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11023genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-16110155147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg WT+ Ed++l+++vk +G+ +W+ Ia+++  gR++k+c++rw++ 
  Tp57577_TGAC_v2_mRNA11023 110 RGHWTPIEDDKLIKLVKDFGPYNWNNIAKHFH-GRSGKSCRLRWRNQ 155
                                899*****************99**********.************96 PP
2Myb_DNA-binding32.61.9e-10162204145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                r  +++eE+ +l+ a + +G++ W+ I + +  gRt++ +k++++
  Tp57577_TGAC_v2_mRNA11023 162 RRCFSEEEEVKLLAAQNFFGNK-WTIICNLFH-GRTDNAVKNHFN 204
                                5679******************.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.178105160IPR017930Myb domain
SMARTSM007174.6E-16109158IPR001005SANT/Myb domain
SuperFamilySSF466896.12E-27110207IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-24111163IPR009057Homeodomain-like
CDDcd001675.33E-15113154No hitNo description
PfamPF139216.0E-18113173No hitNo description
SMARTSM007179.3E-9161209IPR001005SANT/Myb domain
PROSITE profilePS5129413.411161211IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-14164209IPR009057Homeodomain-like
CDDcd001671.80E-6165204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSSLNLNNDG HGFSFDLNVL PLSQVPSSSS TPLLGHVGNN MSENTEIAFN ILKPLVTNSH  60
EKLVTNTEGN KGYFGDEEKN MSLKVDEEEN DGTNVSLETK KIGNDKFFIR GHWTPIEDDK  120
LIKLVKDFGP YNWNNIAKHF HGRSGKSCRL RWRNQLDPKI NRRCFSEEEE VKLLAAQNFF  180
GNKWTIICNL FHGRTDNAVK NHFNIMMARR KREKSSDFSR KRKPTFVASE SITSTIDVSN  240
SACTTLRLFG RPLFNYQTYI SQMGLPGERK EEAGDFGYDT GKPKSVNQFN YSYSNSEALA  300
KSVATIRNNV LGESENVRGT IKVSFIDFLG VGDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-291082102104C-Myb DNA-Binding Domain
1msf_C2e-291082102104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213RRKREK
2208222RRKREKSSDFSRKRK
3208223RRKREKSSDFSRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489664.11e-112transcription factor MYB56-like
RefseqXP_013451507.11e-112transcription factor MYB54
TrEMBLA0A2K3MQ950.0A0A2K3MQ95_TRIPR; Transcriptional activator MYB-like protein
STRINGXP_004489664.11e-112(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.19e-50myb domain protein 56