PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10789
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 334aa    MW: 38645.3 Da    PI: 10.6769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10789genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-18134180148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA10789 134 KGQWTNEEDRKLLKLVKQYGVRKWSQIAEKLE-GRAGKQCRERWYNHL 180
                                799*****************************.*************97 PP
2Myb_DNA-binding49.21.2e-15186228145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                +++W++eE+ +lv+ + + G++ W+ Ia++++ gRt++ +k++w+
  Tp57577_TGAC_v2_mRNA10789 186 KDSWSEEEERILVESHGKIGNR-WAEIAKKIP-GRTENAIKNHWN 228
                                679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.928129184IPR017930Myb domain
SuperFamilySSF466892.46E-30131227IPR009057Homeodomain-like
SMARTSM007172.5E-17133182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-28135188IPR009057Homeodomain-like
PfamPF139215.2E-20137194No hitNo description
CDDcd001677.23E-15137180No hitNo description
PROSITE profilePS5129419.123185235IPR017930Myb domain
SMARTSM007173.1E-15185233IPR001005SANT/Myb domain
CDDcd001672.62E-10188231No hitNo description
Gene3DG3DSA:1.10.10.606.2E-20189233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MKVIGAHVGG GDHIKTTNHS SIGPPLTAID RFLWGQQNHF PQKKLQQNVD DQNMCSFGCS  60
NVSTYSSMWP NNNMILTQEA SFVDHLLANE EVMNWTHQIP SLCVEKEDVI NDLGKGTKMV  120
GKRPKKVSSF SLIKGQWTNE EDRKLLKLVK QYGVRKWSQI AEKLEGRAGK QCRERWYNHL  180
RPDIKKDSWS EEEERILVES HGKIGNRWAE IAKKIPGRTE NAIKNHWNAT KRRQNSRRKN  240
KKPKTTNAKP QSSILQDYIK TLTQKSSTXX XXXXXXXXXX XXXXXXXXXX XXTNPTLTQK  300
KLVLVLVLVV LHILSLQHKF QWHFHSERRH LRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-4512323447158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-4512323447158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10789
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460199.11e-172transcription factor MYB64
SwissprotQ9FIM46e-73MY119_ARATH; Transcription factor MYB119
TrEMBLA0A2Z6MNI01e-176A0A2Z6MNI0_TRISU; Uncharacterized protein
STRINGXP_004500264.11e-156(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-66myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]