PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10569
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 428aa    MW: 48352.1 Da    PI: 8.8259
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10569genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-14311071597
                                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                + +lp +f++++gg+   s  +tl+ ++g +W+v l  +k ++++++ +GW eFv+   + +g  ++F+++g+s+f   v ++
  Tp57577_TGAC_v2_mRNA10569  31 LQRLPDDFVKKYGGN--MSSIVTLTVPDGSVWRVGL--KKEDNKFWFLNGWHEFVQNYSIGTGYLLLFRYEGKSTF--IVNIY 107
                                5589********999..4559***************..********************************998888..77665 PP
2B355.11.4e-17304395498
                                E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                vl ps+  + ++++lp  fae+h +g+ ++ ++l++ d  g++W+v++    +sg+  l++GW eF+ +n+L egD++vF+l+ 
  Tp57577_TGAC_v2_mRNA10569 304 VLRPSYLYRGCIMYLPSCFAEKHlKGV-AGFIKLQISD-GGKQWSVRC--LYNSGKAKLSQGWFEFALENNLGEGDVCVFELVP 383
                                78899******************8666.5666777555.88*******..77777888***********************997 PP

                                SSEE..EEEEE- CS
                         B3  87 rsefelvvkvfr 98 
                                 +e  l v++fr
  Tp57577_TGAC_v2_mRNA10569 384 ANEVVLQVTFFR 395
                                777777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-203107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-164108No hitNo description
PROSITE profilePS5086312.56217110IPR003340B3 DNA binding domain
SMARTSM010191.5E-1118110IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1923108IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-1232107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-22293395IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-22294395IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-21299395No hitNo description
PROSITE profilePS5086313.535301397IPR003340B3 DNA binding domain
SMARTSM010196.3E-16301397IPR003340B3 DNA binding domain
PfamPF023627.9E-16304395IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPSPSFHKLV LPSTLQAKQL KYLEPNLISE LQRLPDDFVK KYGGNMSSIV TLTVPDGSVW  60
RVGLKKEDNK FWFLNGWHEF VQNYSIGTGY LLLFRYEGKS TFIVNIYSFA TSEINYKSPA  120
QSSNKAPHFA KQLEVFEDLE DEDSIEMMHL SPTNLTHSPL QNKAVSGSAD KFTPGKPHSP  180
PALQNLFNGS KLNSLDNQLT RDIGLQFNVV EFKKSTEEVK LRTATDEKVK KTVATEEKVK  240
KSVTKKRKSD VQEPPSEHED EVEMRNRFYE SASARKRTAT AEEREKAMNE AKAFEPSNPF  300
CRVVLRPSYL YRGCIMYLPS CFAEKHLKGV AGFIKLQISD GGKQWSVRCL YNSGKAKLSQ  360
GWFEFALENN LGEGDVCVFE LVPANEVVLQ VTFFRITLDD GLLSPRPVQQ NQHVTTAKPL  420
KVPFSMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-6526739615142B3 domain-containing transcription factor VRN1
4i1k_B3e-6526739615142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606842.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A2K3PKX10.0A0A2K3PKX1_TRIPR; B3 domain-containing transcription factor vrn1-like protein
STRINGAES890390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.18e-69related to vernalization1 1