PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g28320
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 375aa    MW: 40325.6 Da    PI: 9.8214
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g28320genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.52.9e-23250311162
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+  
  Tp4g28320 250 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGA 311
                89*******************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.9E-32193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.4E-15126229No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-19244310No hitNo description
SMARTSM003381.2E-21250314IPR004827Basic-leucine zipper domain
PfamPF001701.2E-21250312IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403252315IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.69E-11253309No hitNo description
CDDcd147021.24E-22255306No hitNo description
PROSITE patternPS000360257272IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGNSEEPKPT KSDKPSSPAD QTNVHVYPDW AAMQAYYGPR VAMPAYYSSA MSASGHPPPP  60
YMWNPQHMMS PYGTPYAAVY PHGGGVYAHP GIPMGSQPQG QKGPPVTTPG TPLSIDTPTK  120
STGNTDNGLM KKLKEFDGLA MSLGNGNPDD NKRSRNSSET EGSTDGSDGN TTGADEPKLK  180
RSREGTPTKD GKHLVQSSSF RSVSPSSGDN GVKPAQVAGA IVSPGVSANS NSFMSQSLAM  240
VPPETWLQNE RELKRERRKQ SNRESARRSR LRKQAETEEL ARKVEALTAE NMALRSELNQ  300
LNEKSDKLRG ANATLLDKLK SSEPEKRVSG NMMSRVKNSG TGDNNKNQGD NESNSTSKLH  360
QLLDTKPRAD AVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266272RRSRLRK
2266273RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g28320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3703070.0AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBankAY0630930.0AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397815.20.0G-box-binding factor 3 isoform X1
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A178VVM50.0A0A178VVM5_ARATH; GBF3
STRINGAT2G46270.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.10.0G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]