PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g24550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | VOZ | ||||||||
Protein Properties | Length: 489aa MW: 54961.4 Da PI: 5.6109 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 417 | 3.3e-128 | 225 | 438 | 2 | 215 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsll 101 ppsaflgpkcalwdc+rpaqgs+w+ dycs +h +lalne++pgt+pvlrp+gi+lkd+ll++al+ak gk+vgip+cega+++k+pwnaaelf+l+l+ Tp4g24550 225 PPSAFLGPKCALWDCARPAQGSDWYLDYCSDYHGNLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKSLGKNVGIPVCEGAVNTKCPWNAAELFHLELV 324 7*************************************************************************************************** PP VOZ 102 egetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvs 201 egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqp+++fewhl+ey+ine+d +alyrlelkl+++kks+kgkv+ Tp4g24550 325 EGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGHFEWHLFEYQINESDVCALYRLELKLTNGKKSPKGKVA 424 **************************************************************************************************** PP VOZ 202 kdsladlqkklgrl 215 kd+ladlqkk+ ++ Tp4g24550 425 KDPLADLQKKMEKM 438 ***********986 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MSNHPKITCL SSAHQNLVEK LMQLQERFCH LQAARKEGRL SDHALLEAQI SQNLREWQAE 60 LSAPSPESSL LGGSISQFSE EIARLLKLND EEDDATSSLK EHAPPKPGGF DQSLCPPEHL 120 DWTAEPFCQS PFNVNFSSGF EDAVNNTETH DQQLHFAFNE FDPSINTAPD FHGQKLSNLD 180 ITSQLDYHLS EVRQEFNNSP SIKLDVSEES ESYAEFTTPS SVRVPPSAFL GPKCALWDCA 240 RPAQGSDWYL DYCSDYHGNL ALNEDSPGTA PVLRPGGISL KDNLLIDALR AKSLGKNVGI 300 PVCEGAVNTK CPWNAAELFH LELVEGETIR EWLFFDKPRR AYDSGNRKQR SLPDYSGRGW 360 HESRKQLMKE QEGQKRSYYM DPQPPGHFEW HLFEYQINES DVCALYRLEL KLTNGKKSPK 420 GKVAKDPLAD LQKKMEKMGQ LTPEVASDKP SPPTKGRTKA TKGLQLMSQT IIQTSRDGFS 480 TSFYLSNIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00018 | PBM | Transfer from AT2G42400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g24550 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013687880.1 | 0.0 | transcription factor VOZ2 | ||||
Refseq | XP_013687881.1 | 0.0 | transcription factor VOZ2 | ||||
Refseq | XP_022557286.1 | 0.0 | transcription factor VOZ2 | ||||
Swissprot | Q9SLB9 | 0.0 | VOZ2_ARATH; Transcription factor VOZ2 | ||||
TrEMBL | A0A078FPJ9 | 0.0 | A0A078FPJ9_BRANA; BnaC04g48260D protein | ||||
TrEMBL | A0A3P6CCF5 | 0.0 | A0A3P6CCF5_BRAOL; Uncharacterized protein | ||||
STRING | XP_006411498.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42400.1 | 0.0 | vascular plant one zinc finger protein 2 |
Publications ? help Back to Top | |||
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