PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g24530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 318aa    MW: 35440.7 Da    PI: 5.2232
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g24530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.5e-11186229548
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  Tp4g24530 186 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 229
                8999********************************98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-13182246IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622184236IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.57E-11186240No hitNo description
PfamPF001703.4E-9186230IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-11186237No hitNo description
CDDcd147038.66E-24187237No hitNo description
PROSITE patternPS000360189204IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTPHWPDFSS QKLSPFSTAT AAATATIASD AAVQNPSWVD EFLDFSASRR GNHRRSISDS  60
IAFLEAPIVT GHVSIEEHQF DRFDDEQFMS MFTDDDDLQN NPSHNNNNSN NVGPTGSSSN  120
TSTPSDHNSF NDDNKEAPSS DHNMKDNNVN NHNDEVQSQC KTEPEDGTAS NNNSGDSSGN  180
RILDPKRVKR ILANRQSAQR SRVRKLQYIS ELERSVTSLQ AEVSVLSPRV AFLDHQRLLL  240
NVDNSALKQR IAALAQDKIF KDAHQESLKR EIERLRQVYH QQSLKTMDDV SLSPATVPEA  300
TSAVDIKPSI EKEQLLNV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g24530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411496.11e-178basic leucine zipper 34
SwissprotF4IN231e-162BZP34_ARATH; Basic leucine zipper 34
TrEMBLV4M9C21e-177V4M9C2_EUTSA; Uncharacterized protein
STRINGXP_006411496.11e-178(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-138bZIP family protein
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]