PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g19440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 76aa MW: 8056.74 Da PI: 10.9176 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 128.4 | 2e-40 | 8 | 74 | 2 | 68 |
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavP 68 ++a++eakGlnPGlivllv+ggll++fl++ny++y+yaqknlP +kkkPvskkklkreklkqGv+vP Tp4g19440 8 GKAAAEAKGLNPGLIVLLVIGGLLVTFLIANYAMYMYAQKNLPSKKKKPVSKKKLKREKLKQGVPVP 74 57899*************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.1E-36 | 12 | 74 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MSSEGSAGKA AAEAKGLNPG LIVLLVIGGL LVTFLIANYA MYMYAQKNLP SKKKKPVSKK 60 KLKREKLKQG VPVPSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g19440 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF372892 | 2e-77 | AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds. | |||
GenBank | AY085439 | 2e-77 | AY085439.1 Arabidopsis thaliana clone 1517 mRNA, complete sequence. | |||
GenBank | BT002669 | 2e-77 | BT002669.1 Arabidopsis thaliana At2g37120/T2N18.12 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565859.1 | 2e-26 | S1FA-like DNA-binding protein | ||||
Swissprot | Q42337 | 1e-27 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A178VX36 | 4e-25 | A0A178VX36_ARATH; Uncharacterized protein | ||||
STRING | AT2G37120.1 | 6e-26 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2823 | 27 | 69 |