PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g02690

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TALE

Protein Properties

Length: 653aa MW: 72048.3 Da PI: 6.9158

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g02690	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1.1e-09	458	495	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + Tp4g02690 458 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 495 665569******************************88 PP
2	BELL	123.6	7.8e-40	316	387	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Tp4g02690 316 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 387 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	9.4E-85	242	385	IPR006563	POX domain
Pfam	PF07526	1.4E-51	248	384	IPR006563	POX domain
PROSITE profile	PS50071	12.86	436	499	IPR001356	Homeobox domain
CDD	cd00086	1.75E-12	439	500	No hit	No description
SMART	SM00389	1.1E-9	439	503	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-17	440	506	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	442	505	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	456	495	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MGLATTTTLP HHRHHHHKTL DNNSDSMSQD YHHHQGIFSF SNGFHRSSSS HQEEVEESAV 60 SGAPIPVYET AGMLSEMFSF PGGGNGGSGE ILDQSTKQLL EQQNHHHNNN NNNSTLHMLL 120 PNHHQAYGFT NEQQHHFTWP SSSDHQSQGD MIGTVHVEGG KGLSLSLSSS LEAAAAAKAE 180 EYRSIYCAAV DGTSSSSNAS AHHHQFNQFK KLLLDNSSSH QHQVVGHFGS SSPSPMAASS 240 SIGGIYTLRN SKYTKPAQEL LEEFCSVGRG HFKKNKLSRN NSNPNTSGGG GGGGGGVGSS 300 SSAGAANDNP PLSPADRIEH QRRKVKLLSM LEEVDRRYNH YCEQMQMVVN SFDQVMGYGA 360 AVPYTTLAQK AMSRHFRCLK DAVAVQLKRS CELLGDKEAA GATSSGLTKG ETPRLRLLEQ 420 SLRQQRAFHH MGMMEQEAWR PQRGLPERSV NILRAWLFEH FLNPYPSDAD KHLLARQTGL 480 SRNQVSNWFI NARVRLWKPM VEEMYQQEAK EREKEEEELE ANQKEDYQQQ RRHQQTNNNN 540 DTKPNESNFT LVQTIAAQTP TTAMMTSTPH ENDSSFLPPS SSVAATAAPH GVSDAFAVAT 600 CQQDVSDFHV DDGVIRFGTK QAGDVSLTLG LRHAGNMPDN KNPSFSVRDF GDF

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MGLATTTTLP HHRHHHHKTL DNNSDSMSQD YHHHQGIFSF SNGFHRSSSS HQEEVEESAV  60
SGAPIPVYET AGMLSEMFSF PGGGNGGSGE ILDQSTKQLL EQQNHHHNNN NNNSTLHMLL  120
PNHHQAYGFT NEQQHHFTWP SSSDHQSQGD MIGTVHVEGG KGLSLSLSSS LEAAAAAKAE  180
EYRSIYCAAV DGTSSSSNAS AHHHQFNQFK KLLLDNSSSH QHQVVGHFGS SSPSPMAASS  240
SIGGIYTLRN SKYTKPAQEL LEEFCSVGRG HFKKNKLSRN NSNPNTSGGG GGGGGGVGSS  300
SSAGAANDNP PLSPADRIEH QRRKVKLLSM LEEVDRRYNH YCEQMQMVVN SFDQVMGYGA  360
AVPYTTLAQK AMSRHFRCLK DAVAVQLKRS CELLGDKEAA GATSSGLTKG ETPRLRLLEQ  420
SLRQQRAFHH MGMMEQEAWR PQRGLPERSV NILRAWLFEH FLNPYPSDAD KHLLARQTGL  480
SRNQVSNWFI NARVRLWKPM VEEMYQQEAK EREKEEEELE ANQKEDYQQQ RRHQQTNNNN  540
DTKPNESNFT LVQTIAAQTP TTAMMTSTPH ENDSSFLPPS SSVAATAAPH GVSDAFAVAT  600
CQQDVSDFHV DDGVIRFGTK QAGDVSLTLG LRHAGNMPDN KNPSFSVRDF GDF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	1e-15	445	503	5	63	Homeobox protein Meis2
4xrm_B	1e-15	445	503	5	63	Homeobox protein Meis2
4xrs_A	9e-16	445	502	1	58	Homeobox protein Meis1
4xrs_B	9e-16	445	502	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g02690

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352811	0.0	AK352811.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-J15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006404859.1	0.0	BEL1-like homeodomain protein 4
Refseq	XP_024014135.1	0.0	BEL1-like homeodomain protein 4
Refseq	XP_024014136.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q94KL5	0.0	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	E4MWB4	0.0	E4MWB4_EUTHA; mRNA, clone: RTFL01-02-J15
TrEMBL	V4LUZ1	0.0	V4LUZ1_EUTSA; Uncharacterized protein
STRING	XP_006404859.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	0.0	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]