PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g20860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 36995.2 Da PI: 4.9528 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.4e-11 | 179 | 226 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RR+ +N++f L ++l + + +K +K++iL A++ +++L Tp3g20860 179 TKACREKKRREMLNDKFMDLSSVLEPT---RTPKTDKSAILDDAIRVVNQL 226 6789**********************9...9****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-12 | 168 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.49E-9 | 173 | 227 | No hit | No description |
PROSITE profile | PS50888 | 12.69 | 175 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-8 | 179 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-9 | 181 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-12 | 182 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MYQSNEDDDD LLAAFCFDQR NGGEDPYAFI QTDQENLFPD YGSSGVNLQP EQEQVCNVGA 60 QFDSFSENLP QVCSFTGENN GLGPFGGVVY SSSIGSSQLD LGASYSGVLQ QEPHQVCSFR 120 GRNDDSATHV QQEQKQACCG VVEINSSSSV GGVKKELKHV EEECSRKRGR TGSCSKPGTK 180 ACREKKRREM LNDKFMDLSS VLEPTRTPKT DKSAILDDAI RVVNQLRGEA HDLKETNQKL 240 LEEIKSLKAE KNELREEKLM LKADKEKIEQ QMKSMAVPSP GFMPSHPAAF HPNKMAMYPS 300 YGYYPNMPMM PYLLQPSERD TSHDQQNCSF AA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 187 | RKRGRTGSCSKPGTKACREKKRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00372 | DAP | Transfer from AT3G23210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g20860 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594063.1 | 0.0 | PREDICTED: transcription factor bHLH34 | ||||
Swissprot | Q9LTC7 | 1e-161 | BH034_ARATH; Transcription factor bHLH34 | ||||
TrEMBL | A0A0D3D5K2 | 0.0 | A0A0D3D5K2_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g040830.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23210.1 | 1e-137 | bHLH family protein |
Publications ? help Back to Top | |||
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