PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g12200
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRF
Protein Properties Length: 410aa    MW: 46451.6 Da    PI: 8.15
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g12200genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.33.1e-2481125145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrgr+r rks ++
  Tp3g12200  81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLDQ 125
                79***************************************9875 PP
2QLQ62.21.4e-211651237
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               +FT++Q+++L++Q+l+yKy+++++PvPpeL++ i++
  Tp3g12200 16 PFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRR 51
               9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.4E-141551IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.0E-161650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4161651IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.29781125IPR014977WRC domain
PfamPF088791.9E-2082122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MMSLSGSSGR TIERPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDSSLVSR  60
LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAR  120
KSLDQNNTTA PLTTPSLSFP NNNNPSPTLS SSSSTYSASS SSPSVDAYSN SNRFGVGSSN  180
TRGYFNNHSL DYPYPSSSPR QQQQQQTLHH ASALSLHQNT STSQFNVLAS STDHKDFRYF  240
QGIGERVGVG ERTFFPEASR SFQDSPYHHQ QPLATVMNDP YHCSADHKVD HHHTYSSSSS  300
TAQHHHHHDQ DPHHRQQQQQ QQQCFVLGAD MFNKPTRNVF ANTSRQDHQG QEEKEKDPSE  360
TKKSLHHFFG EDWAQNKNSS DSWLDLSSHS RLDTDSMNDG SAATHTSLKC
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g12200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026380.0AY102638.1 Arabidopsis thaliana transcription activator (GRF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297825.20.0growth-regulating factor 5
SwissprotQ8L8A60.0GRF5_ARATH; Growth-regulating factor 5
TrEMBLA0A397ZL320.0A0A397ZL32_BRACM; Uncharacterized protein
TrEMBLA0A3P5YXY40.0A0A3P5YXY4_BRACM; Uncharacterized protein
STRINGXP_006297825.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-165growth-regulating factor 5