PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g00880
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 292aa    MW: 33658.3 Da    PI: 6.1242
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g00880genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.52e-1792144456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  Tp3g00880  92 KKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 144
                4457889*********************************************9 PP
2HD-ZIP_I/II1231.4e-3990181192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L  ++++L +e+ 
    Tp3g00880  90 EKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLVHNKKLLAEVI 181
                  69************************************************************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-1884148IPR009057Homeodomain-like
SMARTSM003894.6E-1689150IPR001356Homeobox domain
PROSITE profilePS5007116.01890146IPR001356Homeobox domain
CDDcd000861.89E-1591147No hitNo description
PfamPF000461.2E-1492144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-1894154IPR009057Homeodomain-like
PRINTSPR000313.2E-5117126IPR000047Helix-turn-helix motif
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PRINTSPR000313.2E-5126142IPR000047Helix-turn-helix motif
PfamPF021832.1E-15147186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MYVFDPAADA AAGLRLEMAF PQHGFMFQQL HEDNSHEQLP SCPPPHLFNG GGNYIMNRSM  60
SLTNVQEDHH HQSVDEENLS DDGSHMMLGE KKKRLQLEQV KALEKSFELG NKLEPERKIQ  120
LAKALGMQPR QIAIWFQNRR ARWKTRQLER DYDSLKKQFE SLKSDNDSLL VHNKKLLAEV  180
ITLRNKSCNE VSIIKRETEA SGSNNGSTEN SSDINLEMHR ETTTTHVNTI KDLFPASIRS  240
STHHHDQDDD VHHQNHEIVQ EESFCNMFNV IDETTSAGYW AWSDPNNNHQ FN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g00880
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485524.10.0PREDICTED: homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT01e-178ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A1J3CZL50.0A0A1J3CZL5_NOCCA; Homeobox-leucine zipper protein ATHB-20
STRINGBostr.1460s0094.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-162homeobox protein 20