PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g21000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 276aa MW: 30872.4 Da PI: 5.7262 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.7e-05 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k Fs++ L H++ H Tp2g21000 74 YTCQFCRKGFSTSQALGGHQNAH 96 9*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.19E-7 | 70 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 72 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.946 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MSSSSSSTPH PEKLKDVVVA VEESKEKAAE SNDLRIGSPQ DAMWRSENPS FRSGAVQTGR 60 EIMKLYPSRS NKTYTCQFCR KGFSTSQALG GHQNAHKQER EWEKKRKEME ADYPGLSFLN 120 PYLDKPHLLL GGYSQDALSN DNHLGITLEP FKRVYPSFNR GFPRGIADMN MTVLPRITPT 180 PFFNGTTFTY GSSPRVTDPR PSFNNNPSMI PRNVPPFPPP RTTNLSSAQE DVLSEENLIS 240 KIGNDKVVEI VDDDDDDDQP EEGKSKSWGI DLSLSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g21000 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421563.1 | 1e-125 | PREDICTED: uncharacterized protein LOC104707012 | ||||
TrEMBL | D7M5G8 | 1e-119 | D7M5G8_ARALL; Zinc finger family protein | ||||
STRING | Bostr.29827s0107.1.p | 1e-128 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 3e-82 | C2H2 family protein |