PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g21000

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C2H2

Protein Properties

Length: 276aa MW: 30872.4 Da PI: 5.7262

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g21000	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.7e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k Fs++ L H++ H Tp2g21000 74 YTCQFCRKGFSTSQALGGHQNAH 96 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.19E-7	70	102	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	72	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.946	74	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MSSSSSSTPH PEKLKDVVVA VEESKEKAAE SNDLRIGSPQ DAMWRSENPS FRSGAVQTGR 60 EIMKLYPSRS NKTYTCQFCR KGFSTSQALG GHQNAHKQER EWEKKRKEME ADYPGLSFLN 120 PYLDKPHLLL GGYSQDALSN DNHLGITLEP FKRVYPSFNR GFPRGIADMN MTVLPRITPT 180 PFFNGTTFTY GSSPRVTDPR PSFNNNPSMI PRNVPPFPPP RTTNLSSAQE DVLSEENLIS 240 KIGNDKVVEI VDDDDDDDQP EEGKSKSWGI DLSLSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g21000

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421563.1	1e-125	PREDICTED: uncharacterized protein LOC104707012
TrEMBL	D7M5G8	1e-119	D7M5G8_ARALL; Zinc finger family protein
STRING	Bostr.29827s0107.1.p	1e-128	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	3e-82	C2H2 family protein