PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g01280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | B3 | ||||||||
Protein Properties | Length: 314aa MW: 35657.8 Da PI: 8.0679 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 98.4 | 4.5e-31 | 55 | 157 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sefelv 93 f+kv tpsdv+k++rlv+pk++ae++ ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ ++ +l+ Tp1g01280 55 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDesERSKLY 154 89***************************966677889*************************************************5434423555555 PP EEE CS B3 94 vkv 96 + + Tp1g01280 155 IDW 157 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-42 | 48 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-30 | 51 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.95E-27 | 53 | 149 | No hit | No description |
PROSITE profile | PS50863 | 14.748 | 55 | 161 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.3E-22 | 55 | 161 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-28 | 55 | 158 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDLSLAPTTT TSSDQEQDRD QELTSNVGAS SSSGTGNNSN FPMMMIPPPE KEHMFDKVVT 60 PSDVGKLNRL VIPKQHAERY FPLDSSNNQN GTLLNFQDRN GKMWRFRYSY WNSSQSYVMT 120 KGWSRFVKEK KLDAGDIVSF QRGIGDESER SKLYIDWRHR PDMSLVQTHQ FGNFGFNFNF 180 PTTSQYSNRF NPLPEYSSIP IHRSLNIGNH QRSYYNNQRQ ELVGYGYGNL AGRCYYTGSP 240 LDQRSILGSE PLVIESVPVV PGRLAPVMLP PLPPPPSTAG KRLRLFGVNM ECGNDYNQHD 300 ESWMCSSSSS SFLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-63 | 49 | 163 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-63 | 49 | 163 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g01280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007323 | 0.0 | AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence. | |||
GenBank | AF196566 | 0.0 | AF196566.1 Arabidopsis thaliana chromosome I, partial sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | FJ873733 | 0.0 | FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418368.1 | 0.0 | B3 domain-containing transcription factor NGA3 | ||||
Swissprot | Q9MAN1 | 0.0 | NGA3_ARATH; B3 domain-containing transcription factor NGA3 | ||||
TrEMBL | V4MWI9 | 0.0 | V4MWI9_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.5325s0023.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13990 | 17 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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