PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029471m
Common NameEUTSA_v10029471mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 345aa    MW: 39279 Da    PI: 10.0353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029471mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.1e-102483182680
                      T.........---..--SEEEEEETTS-EEEEEE.....EEETTE....EEE-TTHHHHHHHHT--TT-EE CS
               B3  26 h.........ggkkeesktltledesgrsWevkliy...rkksgr....yvltkGWkeFvkangLkegDfv 80 
                                +++k+ ++  +l d+++ +W v l+    +k sgr    y lt GW++ vkangLk+gD++
  Thhalv10029471m 248 VelriieediNSDKKMGIGAILVDQRNVKWGVMLKRwemKKDSGRgswnYALTCGWNDIVKANGLKQGDII 318
                      1444444445555667788999999998888888444664444446689********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037543.2E-40186308IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.9E-17213335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-17214334IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-11215331No hitNo description
PROSITE profilePS5086311.491236337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MYYSDHLALA EKEITSRNLC CLVDTAVMLY EEELLRKGKS KCHTKTKSTL SAKEEESDKR  60
IFHLFPRKTR TSVFTRRNSQ QNLNVASSSS SFLLDLTTIP ADLKTRNPQN PNGASSSSSS  120
FLENYKIMAE SKKKTEIRNQ RNPNSQSSLS SCLTENKSRK RPATQDTKRC GKSMKAKVET  180
FSWKERETPE WLTLLMNDTN EAVLKWGERT DLRLIFEKTL FKTDVNPGES RLSMPFNELI  240
RKDFLTPVEL RIIEEDINSD KKMGIGAILV DQRNVKWGVM LKRWEMKKDS GRGSWNYALT  300
CGWNDIVKAN GLKQGDIISV WSFRWGGLLC FALVTPPPSI GLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029471m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396952.10.0B3 domain-containing protein At3g25182
SwissprotQ9LSF71e-111Y3518_ARATH; B3 domain-containing protein At3g25182
TrEMBLV4KKK30.0V4KKK3_EUTSA; Uncharacterized protein
STRINGXP_006396952.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.18e-51B3 family protein