PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028701m
Common NameEUTSA_v10028701mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 406aa    MW: 44672.1 Da    PI: 9.267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028701mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0579101123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k F r  nL+ H r H
  Thhalv10028701m  79 FVCEICNKGFQRDQNLQLHRRGH 101
                      89*******************88 PP
2zf-C2H212.80.00035156178123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +++
  Thhalv10028701m 156 WKCEKCSKFYAVQSDWKAHTKVC 178
                      58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.78E-577102No hitNo description
Gene3DG3DSA:3.30.160.601.3E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PfamPF121716.2E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355290121151IPR015880Zinc finger, C2H2-like
SMARTSM00355180156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFSSRNWSYK LSSLSAEASA SSGNTIQDFN GLNNVISSRL CTHAETQKTK KRRGIPGNPD  60
PEAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQK NSKEHQKKKV  120
YVCPETNCVH HHPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKFYAVQSD WKAHTKVCGT  180
REYRCDCGTL FSRKDSFITH RAFCDALAEE NARIISSSSS NLTNPDPNFQ DRNFMLNKSP  240
SSLLFTSPFY ADPSRSAAAA AVSSSSTAAL SATALLQKAT ALSSGAFGGG GGQTRSIGHH  300
RQLATTANEL LGVDRVMMMS SSSSEYDQLV VDGLTSTWQK ADHLTRDFLG LTGHGVHVSV  360
RPGDMLEYTD GVAFPMSAYD TESHNHESSS FHKAYDLGFS GPHTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36152221372Zinc finger protein JACKDAW
5b3h_F6e-36152221372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028701m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396480.20.0protein indeterminate-domain 12
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLV4LDR10.0V4LDR1_EUTSA; Uncharacterized protein
STRINGXP_006396480.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]