PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027321m | ||||||||
Common Name | EUTSA_v10027321mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | Dof | ||||||||
Protein Properties | Length: 241aa MW: 27107 Da PI: 6.9318 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 101.3 | 5.8e-32 | 21 | 76 | 5 | 60 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + cprC+s+ntkfCyynnys+sqPry Ck+Crr+Wt+GG+lr++ +Gg k k+ Thhalv10027321m 21 PRVCPRCNSDNTKFCYYNNYSVSQPRYICKNCRRHWTHGGTLRDISIGGHGLKTKR 76 678*********************************************98877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-20 | 16 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.499 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-29 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MANSNIFVIG DNQVTEEKPP PRVCPRCNSD NTKFCYYNNY SVSQPRYICK NCRRHWTHGG 60 TLRDISIGGH GLKTKRPKID QPSVSQIVSV EIQQVNHNQP FLNVQETNNF VGTLGPSSST 120 VVAVGNHFDF LPEIHGDMVL PIRSVPPVNQ DYYDVGSNAL IGNPWINQPI DGNFYSYRIN 180 QEDQNKQNQN FNNNIMNINH NAGISGSRES SDIDHMNKNN NKIENNCVPS SSDYMEKFGF 240 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027321m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408692.1 | 1e-144 | dof zinc finger protein DOF4.4 | ||||
Swissprot | Q9SUA9 | 2e-62 | DOF44_ARATH; Dof zinc finger protein DOF4.4 | ||||
TrEMBL | V4LXC6 | 1e-176 | V4LXC6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413887.1 | 1e-177 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21050.1 | 3e-55 | Dof-type zinc finger domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027321m |
Entrez Gene | 18029764 |