PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027080m
Common NameEUTSA_v10027080mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 266aa    MW: 29954 Da    PI: 7.2889
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027080mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.65.7e-382178461
           zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                       + cprC+s+ntkfCyynnys+sqPryfCk+CrryWt+GGalrn+P+Gg++rk+k+ 
  Thhalv10027080m 21 PPRVCPRCNSDNTKFCYYNNYSVSQPRYFCKNCRRYWTHGGALRNIPIGGSCRKSKRP 78
                     5678***************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-261777IPR003851Zinc finger, Dof-type
PfamPF027012.5E-322377IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0592377IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102561IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDFSNVFVKE DNQVNEEKPP PPRVCPRCNS DNTKFCYYNN YSVSQPRYFC KNCRRYWTHG  60
GALRNIPIGG SCRKSKRPKM DQPSVSQVVS VEIQQANHHQ PLLHTQETNE FVGSFAQKTK  120
EFVGSFGSSS SVVVENHFGS LPEIHGDMVT NVPPIQSFPP MEAFDFSDVS FRQDYYDGGS  180
SDFVGNPLIN QSFDGSFAVS SDHNSYRINQ EDPNKWNPSF NNIMNMNHNA INIGSRGSSS  240
TDHVNRIRNT SVFESSSYQM KKHGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027080m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413831.10.0dof zinc finger protein DOF4.4
SwissprotQ9SUA92e-81DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4MFK80.0V4MFK8_EUTSA; Uncharacterized protein
STRINGXP_006413831.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-74Dof-type zinc finger domain-containing protein