PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026930m
Common NameEUTSA_v10026930mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 265aa    MW: 28518.9 Da    PI: 5.0669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026930mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038137158223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C +Cg+ F ++     H rtH
  Thhalv10026930m 137 VCDICGRGFGSWKAVFGHKRTH 158
                      6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
PfamPF139121.5E-5138160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSNPEKVDDT EEEREYSDEQ WSDDESTMRD IVLALPAALR ISSESLGVSS VVEEEEARLN  60
EQAVVAAELV MAAAEEAVMK EKSDGKKKKK RKKVSRPRKT MKLINDDEAS GSGKGRETKK  120
PKKKASESTN PPRGPPVCDI CGRGFGSWKA VFGHKRTHKG RNYQEIRFLT FPPPPKFSLA  180
EGFMIPGPNS AFVLFTAGGG RSGGIVNRGG GGAPEGEAGR GLGVGLNVDP VEEIDQEVTE  240
SGSIAKFDLN KSPPNDAEED DEAK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691KKKKRK
28692KKKKRKK
38892KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026930m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412083.10.0uncharacterized protein LOC18028270
TrEMBLV4P2H50.0V4P2H5_EUTSA; Uncharacterized protein
STRINGXP_006412083.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.11e-45C2H2 family protein