PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026710m
Common NameEUTSA_v10026710mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 80aa    MW: 9137.97 Da    PI: 8.959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026710mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT  E +l+ +a + +  +   +W+ +ar +g g+++++++ ++ 
  Thhalv10026710m 11 SWTRKENKLFERALATYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 55
                     6*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.189762IPR017884SANT domain
SMARTSM007172.3E-9860IPR001005SANT/Myb domain
PfamPF002494.7E-81155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-61164IPR009057Homeodomain-like
SuperFamilySSF466897.33E-141165IPR009057Homeodomain-like
CDDcd001671.76E-71258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MASNSMSSNA SWTRKENKLF ERALATYDQD TPDRWHNVAR AVGGKSAEEV RRHYELLIRD  60
VNDIESGRYP HPNYRSNGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30178177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026710m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0107701e-101BT010770.1 Arabidopsis thaliana At4g36570 mRNA, complete cds.
GenBankBT0112551e-101BT011255.1 Arabidopsis thaliana At4g36570 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411987.12e-53protein RADIALIS-like 3
SwissprotQ6NNN01e-53RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLV4LS596e-52V4LS59_EUTSA; Uncharacterized protein
STRINGXP_006411987.19e-53(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-34RAD-like 1