PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025820m
Common NameEUTSA_v10025820mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 305aa    MW: 34739.1 Da    PI: 7.5921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025820mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08152198555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                      h+ +Er RR++i +++  L++++P +     +K   Ka +L + ++Y++sLq
  Thhalv10025820m 152 HSLAERARREKISKKMKCLQDIVPGC-----TKvTGKAGMLDEIINYVQSLQ 198
                      999**********************9.....78899***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-7145202No hitNo description
SuperFamilySSF474592.88E-16145217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.405147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-17149216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDLYIPEKLK WLQQQQMVSP EFLQILGSGG REELKRVESY LGNTNDELQS FRHFPEFGPD  60
YNVIDGCISR TSSFQMEPVK NDEVNRAISF QNKRKPEGKT EKREKKKIKT EAETETSMKG  120
KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCTKV  180
TGKAGMLDEI INYVQSLQQQ VEFLSMKLSV LNPELEFHIN ELSTKQFQAY FADLPEAVSK  240
QSVMADLQSF PLHQQGSLDY SVINSSQTTS LGIKDQTSAS WETHSQSLYN SLRTDSVSNF  300
FSLK*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025820m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527230.0AK352723.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411992.10.0transcription factor BEE 2 isoform X1
SwissprotQ93VJ40.0BEE2_ARATH; Transcription factor BEE 2
TrEMBLE4MW260.0E4MW26_EUTHA; mRNA, clone: RTFL01-02-A24
TrEMBLV4LS640.0V4LS64_EUTSA; Uncharacterized protein
STRINGXP_006411992.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.10.0BR enhanced expression 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]