PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025715m
Common NameEUTSA_v10025715mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 325aa    MW: 36734 Da    PI: 7.3442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025715mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-12147193455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  Thhalv10025715m 147 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 193
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-10147193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16147207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-11148196No hitNo description
SuperFamilySSF474592.09E-16148212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-14149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSVSGFSEQE VEESYHMNSI MGEVHEAQYT LPHYFSDLET TTNDPSYDDL IEMKSSKILK  60
TTYILPKMPP PLPSSSPHLH HQPSSRILSF GNASPNVVDE YSSTYLKSIF SPKVEAEVPP  120
QRLNESINRK GTKRAQPFYR SQSNAQDHII AERKRREKLT QRFVALSALV PGLKKMDKAS  180
VLGDALKHIK YLQERVGEFE EQKKERRLES MVLVKKSKLI LDDSNLTASS SCCEDGSSGL  240
ELPEIEVRFS DKDVLIKILC ERHNGHITKI MAAIEKFRFS ITNSSVFPFG PTLDITIIAK  300
KESDFDMTLI DVVKSLRSDL SKFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025715m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885670.0AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005681.10.0transcription factor bHLH25
SwissprotQ9T0721e-163BH025_ARATH; Transcription factor bHLH25
TrEMBLV4MKQ60.0V4MKQ6_EUTSA; Uncharacterized protein
STRINGXP_006411845.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-160bHLH family protein