PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023946m
Common NameEUTSA_v10023946mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 241aa    MW: 27134 Da    PI: 6.883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023946mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-1866116155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrdp    +r  r +lg+f taeeAa+ +++a+ +++g
  Thhalv10023946m  66 KKFRGVRQRP-WGKWAAEIRDP----IRgVRRWLGTFNTAEEAARVYDNAAVQIHG 116
                      59********.**********7....246**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.23E-3266126No hitNo description
SMARTSM003803.9E-3367130IPR001471AP2/ERF domain
PROSITE profilePS5103222.98567124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-2867124IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2167124IPR016177DNA-binding domain
PfamPF008471.0E-1067116IPR001471AP2/ERF domain
PRINTSPR003675.1E-106879IPR001471AP2/ERF domain
PRINTSPR003675.1E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
TPRILRISVT DPYATDSSSS DEEENHNRTR KRRRIKRYVR EITFETPLYS SKHQNVSKKR  60
DSTEKKKFRG VRQRPWGKWA AEIRDPIRGV RRWLGTFNTA EEAARVYDNA AVQIHGLAAV  120
TNFAAASIPP ETPCAAACIQ SPSTVLHSST SLDSLSNSPT GLENRFPAAP EKIFPPNDSV  180
FLGDDFNLSE IFVEDCFSTG FSSTFGFSHR HVEDRFNDIS DLFGSDPFQD FDHFFGSDFT  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1962123971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933RKRRR
22936RKRRRIKR
33034KRRRI
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023946m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391650.21e-178ethylene-responsive transcription factor CRF1
SwissprotO825039e-48CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLV4MCI31e-176V4MCI3_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006391650.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2262444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-29cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]