PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10022273m | ||||||||
Common Name | EUTSA_v10022273mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 39121.9 Da PI: 6.7916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.6e-08 | 262 | 302 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L Thhalv10022273m 262 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 302 69******************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.123 | 253 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-13 | 258 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-13 | 259 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.84E-11 | 259 | 307 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.6E-12 | 261 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-6 | 262 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE QLCCSSTSSH QLINPTLSSC 60 FMSDLGVISE IQHLQHVGNR ATSIDPSSLD CLLSATTNSN NTSTEDDEGI SVLFSDCQTL 120 WSFGGVSSAE SENREINTET TIKPKSLKRN RGGDESGSHF RLVHHPQDDS EKGNFKLIYD 180 KNQSKSKKPR TEKERGGSSN ISFQHSSSLS DNVEPDAEAI AQMKEMIYRA AAFRPVNFGL 240 EIVEKPKRKN VKISTDPQTV AARQRRERIS EKIRVLQTLV PGGTKMDTAS MLDEAANYLK 300 FLRAQVKALE NLRPKLDPTS LSFSSVSPAF PLFHPSLLPL QNPNQIHHHP EC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 262 | 267 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10022273m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488617 | 0.0 | AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AP001305 | 0.0 | AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9. | |||
GenBank | BT020364 | 0.0 | BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006406283.1 | 0.0 | transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 0.0 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | V4NMP9 | 0.0 | V4NMP9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006406283.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7960 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10022273m |
Entrez Gene | 18023956 |
Publications ? help Back to Top | |||
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