PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021187m
Common NameEUTSA_v10021187mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 312aa    MW: 34923.5 Da    PI: 10.0922
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021187mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.8e-102767545
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                     k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Thhalv10021187m 27 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 67
                     7889************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-81770No hitNo description
SMARTSM003381.8E-62386IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4382569IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.87E-72770No hitNo description
PfamPF001706.3E-72767IPR004827Basic-leucine zipper domain
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
PfamPF141441.8E-34109184IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MQSERGQLMH AAASDSSDRS KDKLDQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLKL  60
TQLEQELQRA RQQGVFISSS GDQAHSTSGN GALAFDAEHS RWLEEKNRQM NELRSALNAH  120
AGDTELRIIV DGVMAHYEEL FRIKSNAAKN DVFHLLSGMW KTPAERCFLW LGGFRSSELL  180
KLLANQLEPM TERQVMGINS LQQTSQQAED ALSQGMESLQ QSLADTLSSG TLGSSSSDNV  240
ASYMGQMAMA MGQLGTLEGF IRQADNLRLQ TLQQMIRVLT TRQSARALLA IHDYSSRLRA  300
LSSLWLARPR E*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021187m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014894.10.0transcription factor TGA6 isoform X2
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLV4LEA00.0V4LEA0_EUTSA; Uncharacterized protein
STRINGXP_006407352.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.31e-165TGACG motif-binding factor 6