PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020738m
Common NameEUTSA_v10020738mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 443aa    MW: 48929.2 Da    PI: 5.2741
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020738mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.73.6e-30232286155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+rWtpeLHe F + v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  Thhalv10020738m 232 KPRMRWTPELHELFAKSVTELEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 286
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.13E-15230286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-29230287IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-22232287IPR006447Myb domain, plants
PfamPF002492.0E-8234285IPR001005SANT/Myb domain
PfamPF143793.4E-22322369IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MNSHRLVSTA QDECNKGIRQ ACSSSSLSPV HNFLNVVQSE NRKSPFIRSK SPDSPDQLWP  60
KNSSQSTFSR SSTFCTNLYV SSSSSSEAQK HLGNSLPFLP DPSAYSQSAS GVESARSPSF  120
FSEDLGNPFD GDSSGSLVKD FLNLSGNACS DGGFHDLDCS NDSYCLSDQM ELQFLSDELE  180
LAITDRAETP RLDEIYETPL SSNPVTRTSL SQSCVAGATS TDAVPGSAAS HKPRMRWTPE  240
LHELFAKSVT ELEGPEKATP KAVLKLMNVE GLTIYHVKSH LQKYRLAKYM PEKKEEKKNV  300
NSEEKKTALS NSEADEKKKG AIQLTEALRM QMEVQKQLHE QLEVQRVLQL RIEEHAKYLE  360
KMLEEQRKTT GRLISSSSSQ TLLSPSDDSI PECQNMSKTE ASSPQPSSPA KNTVSETEDG  420
DCESPQKRRR LENDAESEDP KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23232289259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426430KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020738m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534830.0AK353483.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407271.10.0myb family transcription factor PHL6
RefseqXP_006407272.10.0myb family transcription factor PHL6
RefseqXP_024015319.10.0myb family transcription factor PHL6
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLE4MY860.0E4MY86_EUTHA; mRNA, clone: RTFL01-45-K13
TrEMBLV4LE320.0V4LE32_EUTSA; Uncharacterized protein
STRINGXP_006407271.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]