PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10019063m

Common Name

EUTSA_v10019063mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 242aa MW: 27404.2 Da PI: 7.9707

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10019063m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.1e-07	65	118	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ n++Er RR r+ ++ +L +llP +++ ++kK +i ++v YI +L Thhalv10019063m 65 KKQERNANERLRRMRLHASYLTLGTLLPDLPSSSKKKWCAPSIMDRVVTYIPKL 118 67889**********************76888888************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-9	56	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.03E-5	62	123	No hit	No description
PROSITE profile	PS50888	11.573	64	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-8	65	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-4	65	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-5	70	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSNHQTLASS LLNHLLHIPA AETIRAKESG NKDEEDTYQA QPDIRRGKEA LALHDHQDHG 60 SSGAKKQERN ANERLRRMRL HASYLTLGTL LPDLPSSSKK KWCAPSIMDR VVTYIPKLRN 120 EVEEITLRKQ NLVEKMETKR SSWESERQVP HIRAISVLEL VGSGHEAVVQ ISMKKEKEDE 180 FSNLLHVIEV QGFSILSAST SQVCQHQRVV CYNFHCKMDE KPCEGDDYIT VLKKNIIASL 240 S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10019063m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016162	2e-59	AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBank	AC016972	2e-59	AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBank	CP002684	2e-59	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390794.1	0.0	transcription factor bHLH160 isoform X1
Swissprot	F4I8F9	6e-97	BH160_ARATH; Transcription factor bHLH160
TrEMBL	V4JS50	1e-179	V4JS50_EUTSA; Uncharacterized protein
STRING	XP_006390794.1	1e-180	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	2e-99	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10019063m
Entrez Gene	18008010

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]