PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017258m | ||||||||
Common Name | EUTSA_v10017258mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22280.8 Da PI: 5.5959 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.2e-18 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Thhalv10017258m 49 TFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 98 59****998.**********854...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.3E-39 | 49 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 49 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-21 | 49 | 107 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 49 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.04E-33 | 50 | 108 | No hit | No description |
PRINTS | PR00367 | 2.0E-10 | 50 | 61 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 50 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEHSSPSESQ PEDCRRFQDP PAQATERRVR KKRAKYDDDD EKVVSKHPTF RGVRMRQWGK 60 WVSEIREPKK KSRIWLGTFS TAEMAARAHD VAALAIKGGS AHLNFPELAY HFPRPASADP 120 KDIQAAAAAA AVAAVPIDME VETSSSPSPT STEPSSPAMT EIFDDAFSDL PDLLLDVNHT 180 IDGFWDSFHY QEPFFSQSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 37 | 106 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00292 | DAP | Transfer from AT2G35700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017258m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410739.1 | 1e-145 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q9ZQP3 | 8e-98 | ERF38_ARATH; Ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | V4MAP4 | 1e-144 | V4MAP4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410739.1 | 1e-145 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2492 | 23 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35700.1 | 1e-87 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017258m |
Entrez Gene | 18027392 |
Publications ? help Back to Top | |||
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