PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017167m | ||||||||
Common Name | EUTSA_v10017167mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27341.9 Da PI: 5.1846 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.8 | 3.4e-17 | 63 | 115 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iN f+ Lr++lP + +skKls ++++ +A +YI +Lq Thhalv10017167m 63 KKLNHNASERDRRKKINAMFSSLRDCLPAtD---QSKKLSVSATVSQALKYIPELQ 115 6789*************************77...*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.888 | 62 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.93E-15 | 62 | 117 | No hit | No description |
Pfam | PF00010 | 1.1E-14 | 63 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-16 | 63 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-18 | 63 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-14 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MCALVPPLFP NFGWPCGDHG LYENDDVSNT FLDFPLPEFQ VAHRNVSLER NTILEIENPV 60 AMKKLNHNAS ERDRRKKINA MFSSLRDCLP ATDQSKKLSV SATVSQALKY IPELQEQVKK 120 LVKKKEELSF QISGQRDLVY TDQNGEPKKG VTSYASTVSA TKLGETEVMV QISSLQTEKC 180 SFGNVLNGVE EDGLVLLDAS SSRSQGERLF YTLHLQMDNC NLNSEELSDR LSYLYENFGK 240 SFT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in metal homeostasis. Confers tolerance to high zinc (Zn) and nickel (Ni). {ECO:0000269|PubMed:18088336}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017167m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by heat treatment, high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17516080, ECO:0000269|PubMed:18088336}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411389.1 | 0.0 | transcription factor bHLH100 isoform X1 | ||||
Swissprot | Q9ZVB5 | 1e-136 | BH100_ARATH; Transcription factor bHLH100 | ||||
TrEMBL | V4MCC8 | 1e-180 | V4MCC8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411389.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41240.1 | 1e-132 | basic helix-loop-helix protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017167m |
Entrez Gene | 18027731 |