PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10016812m | ||||||||
Common Name | EUTSA_v10016812mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | AP2 | ||||||||
Protein Properties | Length: 375aa MW: 41554.3 Da PI: 9.3549 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 71 | 130 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g Thhalv10016812m 71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 130 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.73E-17 | 71 | 139 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.3E-13 | 71 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 72 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-25 | 72 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-15 | 72 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-5 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-5 | 120 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MASMSSSDHG PKTETGCSGG GVGGGESSET VAASDQMMLY RGFKKAKKER GCTAKERISK 60 MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA 120 YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NLSREEYLAS LRRYPFGRKS SGFSRGIAKY 180 RGLQSRWDAS GSRMPGPEYF SNIHYGAGDD RGTEGDFLGS FCLERKIDLT GYIKWWGVNK 240 TRQPESSSKA SDDAKVEDAG TELKTLEHTS QATEPYKAPN LGVLRGTQRK EKQISSPSST 300 SSALSILTAS PAYKSLEDKV LKIQEISSTR ENDENANRNI ISMEKSHGKE IEKPVVSHGV 360 AQGRVYVMDW ETLA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10016812m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353534 | 0.0 | AK353534.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411436.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Swissprot | Q8GWK2 | 0.0 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | V4M966 | 0.0 | V4M966_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411436.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10815 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.2 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10016812m |
Entrez Gene | 18027804 |